Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq7 100 2e-16
seq6 86.0 5e-12
seq5 86.0 5e-12
seq3 84.2 2e-11
>seq7
Length=154015841
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| |||||||| || || | || ||||| ||||||||| | || |||| |
Sbjct 60356398 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTGGAGTCCTCA 60356339
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || |||||| || || || ||| | ||| ||| |||
Sbjct 60356338 GACACAATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 60356279
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | ||| || || ||||||||||| | | || ||||||||||||||
Sbjct 60356278 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 60356219
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || ||||||||||| | ||| |||||
Sbjct 60356218 ATCCAGAAGGAGTCTACCCTCCACCTGGTG 60356189
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| || || || || || | || || || || || || |||| ||||
Sbjct 36806534 AAAATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTGGAGAGC 36806593
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|||| || ||| | | || || |||||| ||||| || ||| | || |||
Sbjct 36806594 AGCGACACCATCGACAATGTCAAGACTAAGATTCAGGATAAGGAGGGCATCCCGCCGGAC 36806653
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| | || || | || || || ||||||||||||| | || | || ||||||
Sbjct 36806654 CAGCAGTGCCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTAC 36806713
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| || || ||||| ||| ||||| |||||
Sbjct 36806714 AACATCCAGAAAGAGTCGACGCTGCACCTGGTG 36806746
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || || || || | || ||||| ||||| ||| |||| ||| |
Sbjct 60357082 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 60357023
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || ||| ||||| || || |||||| | ||| ||| |||
Sbjct 60357022 GACACAATTGACAACGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 60356963
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || || ||||| ||||| | | || | ||||||||||||
Sbjct 60356962 CAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTGCGGACTACAAC 60356903
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || | ||| |||||
Sbjct 60356902 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 60356873
>seq6
Length=240577051
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| || | || ||||| ||||| ||| |||| ||| |
Sbjct 194678580 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 194678639
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || ||| || || || || ||| | ||| ||| |||
Sbjct 194678640 GATACCATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 194678699
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || || ||||| ||||| | | || | ||||||||||||
Sbjct 194678700 CAGAGGCTCATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCGGACTACAAC 194678759
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || | ||| |||||
Sbjct 194678760 ATCCAGAAGGAGTCGACCCTCCACTTGGTG 194678789
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || | || ||||| ||||| || | || ||| |
Sbjct 194678808 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCT 194678867
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 194678868 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 194678927
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | ||||| | ||| || || ||||| ||||| | | || ||||||||||||||
Sbjct 194678928 CAGCGCCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGGCGGACTACAAC 194678987
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| || |||||||| || | ||| | ||| | || || |||| ||||
Sbjct 194678988 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTGAGAGGTGGAA 194679036
>seq5
Length=158699395
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || ||||| || | || ||||| ||||||||| |||| |||| | |
Sbjct 81635742 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTGGAGTCCTCC 81635801
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || ||||| || || || ||| | ||| || |||
Sbjct 81635802 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 81635861
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | ||| || || ||||||||||| | | || |||| |||||||||
Sbjct 81635862 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 81635921
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || | ||| |||||
Sbjct 81635922 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 81635951
>seq3
Length=300915289
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| ||| | ||||| || ||||| || | || ||| |||
Sbjct 25197197 ATGCAGATATTTGTCAAGACTCTCACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTC- 25197255
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| ||| ||| | | || || |||||| ||||| || || | || ||||||
Sbjct 25197256 CGACACTATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCGGATCA 25197315
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | ||| || || ||||| ||||| | ||| |||| ||||| ||
Sbjct 25197316 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGGACACTGGCTGACTATAA 25197375
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||| ||
Sbjct 25197376 CATCCAGAAGGAGTCCAC 25197393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398777682730021
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |