Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 seq6 86.0 5e-12 seq5 86.0 5e-12 seq3 84.2 2e-11 >seq7 Length=154015841 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || ||||| ||||||||| | || |||| | Sbjct 60356398 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTGGAGTCCTCA 60356339 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 60356338 GACACAATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 60356279 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||||||||||||| Sbjct 60356278 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 60356219 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 60356218 ATCCAGAAGGAGTCTACCCTCCACCTGGTG 60356189 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || || || | || || || || || || |||| |||| Sbjct 36806534 AAAATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTGGAGAGC 36806593 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | | || || |||||| ||||| || ||| | || ||| Sbjct 36806594 AGCGACACCATCGACAATGTCAAGACTAAGATTCAGGATAAGGAGGGCATCCCGCCGGAC 36806653 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||||||||||| | || | || |||||| Sbjct 36806654 CAGCAGTGCCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTAC 36806713 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || || ||||| ||| ||||| ||||| Sbjct 36806714 AACATCCAGAAAGAGTCGACGCTGCACCTGGTG 36806746 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| |||| ||| | Sbjct 60357082 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 60357023 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || ||| ||||| || || |||||| | ||| ||| ||| Sbjct 60357022 GACACAATTGACAACGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 60356963 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || | |||||||||||| Sbjct 60356962 CAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTGCGGACTACAAC 60356903 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 60356902 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 60356873 >seq6 Length=240577051 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| |||| ||| | Sbjct 194678580 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 194678639 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||| || || || || ||| | ||| ||| ||| Sbjct 194678640 GATACCATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 194678699 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || | |||||||||||| Sbjct 194678700 CAGAGGCTCATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCGGACTACAAC 194678759 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 194678760 ATCCAGAAGGAGTCGACCCTCCACTTGGTG 194678789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || ||||| ||||| || | || ||| | Sbjct 194678808 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCT 194678867 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 194678868 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 194678927 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| || || ||||| ||||| | | || |||||||||||||| Sbjct 194678928 CAGCGCCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGGCGGACTACAAC 194678987 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || |||||||| || | ||| | ||| | || || |||| |||| Sbjct 194678988 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTGAGAGGTGGAA 194679036 >seq5 Length=158699395 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||||||| |||| |||| | | Sbjct 81635742 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTGGAGTCCTCC 81635801 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| || ||| Sbjct 81635802 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 81635861 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||| ||||||||| Sbjct 81635862 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 81635921 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 81635922 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 81635951 >seq3 Length=300915289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | ||||| || ||||| || | || ||| ||| Sbjct 25197197 ATGCAGATATTTGTCAAGACTCTCACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTC- 25197255 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| ||| | | || || |||||| ||||| || || | || |||||| Sbjct 25197256 CGACACTATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCGGATCA 25197315 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||| ||||| | ||| |||| ||||| || Sbjct 25197316 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGGACACTGGCTGACTATAA 25197375 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 25197376 CATCCAGAAGGAGTCCAC 25197393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398777682730021