Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 140 2e-28 seq2 122 7e-23 seq5 114 1e-20 seq4 105 5e-18 seq7 95.1 9e-15 >seq3 Length=300915289 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||||||||| | |||||| |||||||| || || |||||||| ||||| Sbjct 25198107 CCTCCCCTCAAACGCAGCACAAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGCC 25198048 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || | ||| || |||||| | || | || ||||| || || || Sbjct 25198047 AATGTGCGCCCATCCTCCAATTGCTTCCCAGCAAAGATAAGTCGCTGCTGGTCTGGTGGG 25197988 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || || ||| | || | ||||| || || ||| Sbjct 25197987 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATTGTGTCGGAGCTCTCAACT 25197928 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || ||||||| ||| || ||||| |||||||| Sbjct 25197927 TCAAGTGTGATGGTCTTCCCAGTTAGGGTCTTGACAAAAATCTGCAT 25197881 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| || | ||||| ||||| || || || |||||||| || || Sbjct 25197423 CCACCTCTCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCC 25197364 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || || ||||||||| | || | || ||||||||||| || Sbjct 25197363 AGTGTCCGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCCGGAGGG 25197304 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| || || || ||| || | |||||| | || | |||||| || || || Sbjct 25197303 ATACCCTCCTTATCCTG-AATCTTGGCCTTGACATTGTCGATAGTGTCGGAGCTCTCAAC 25197245 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || || || | || || |||||||||||||| Sbjct 25197244 CTCCAAAGTGATGGTCTTCCCTGTGAGAGTCTTGACAAATATCTGCAT 25197197 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||| ||||| ||||| || || || || || || || || || || Sbjct 25197652 TCCTCCTCGAAGGCGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCTGC 25197593 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| ||| || || || || || ||| | || | || |||||||| || || Sbjct 25197592 CAGAGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATGAGCCTCTGCTGATCAGGTGG 25197533 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| || || || ||| || | |||||| | || | ||||| ||| || | Sbjct 25197532 GATTCCCTCCTTATCCTG-AATCTTCGCCTTGACATTGTCAATGGTGTCTGAACTCTCCA 25197474 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| || || || || | ||| || |||||||||||||| Sbjct 25197473 CCTCAAGAGTTATCGTCTTCCCGGTGAGGGTCTTCACAAATATCTGCAT 25197425 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| || || ||||| || || || ||||| || | ||||| || || Sbjct 25197861 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCCAATGTGCGTCCGTCCTCC 25197802 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | || || |||||| | || | || ||||| || ||||| || ||||||||||| || Sbjct 25197801 GGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCCTGG 25197742 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| |||||| | || | |||||||| || ||||| ||||| ||||| || Sbjct 25197741 ATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCCAGAGTGATAGTCTTC 25197682 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||| | || || ||||| || |||||| Sbjct 25197681 CTAGTAAGTGTCTTCACAAAGATATGCATT 25197652 >seq2 Length=243061704 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| || ||||||| || || ||| || || |||||||||||||| ||| Sbjct 233057250 CCACCCCTCAGGCGGAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTATAATCAGCA 233057191 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || |||||||| | |||| | ||||| ||||| || Sbjct 233057190 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 233057131 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||||| || || Sbjct 233057130 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACC 233057071 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| ||||| || || || |||||||| Sbjct 233057070 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 233057024 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||||||| ||||||| || || ||| || || || ||||| ||||| || Sbjct 233057022 CCACCCCTCAAACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCG 233056963 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || ||||| || |||||||| | || | || ||||| ||||| || Sbjct 233056962 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 233056903 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||||| || || Sbjct 233056902 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGACGACTCCACC 233056843 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 233056842 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 233056796 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||||| || || ||| || || || ||||| ||||| || Sbjct 233056794 CCTCCCCTGAGACGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCG 233056735 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || ||||| || |||||||| | || | || ||||| ||||| || Sbjct 233056734 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 233056675 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | |||||||| || || Sbjct 233056674 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 233056615 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || ||||| |||||||| Sbjct 233056614 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 233056568 >seq5 Length=158699395 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || ||||| || || ||||||||||| || |||| || || Sbjct 71681549 ACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTCCGGCC 71681608 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || ||||| | || | | ||||| || || || || || ||||| Sbjct 71681609 ATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCTTT 71681668 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| |||| ||| ||| | || | ||||||||| || |||||||| || | Sbjct 71681669 GTCTTG-AATCTTTGCTTTCACATTATCAATTGTGTCAGAAGACTCAACTTCAAGTGTGA 71681727 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | || || || || || ||||| Sbjct 71681728 TGGTCTTTCCAGTCAGAGTCTTCACGAAGATTTGCAT 71681764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || || || || || ||||||||||| || |||| || || Sbjct 71676716 ACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGCAAGAGTCCGGCC 71676775 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || ||||| | || | | ||||| || || || || || || || Sbjct 71676776 ATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCCTT 71676835 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| ||| | || | ||||| ||| || |||||||| || | Sbjct 71676836 GTCCTG-AATCTTTGCTTTCACATTATCAATTGTGTCGGAAGACTCAACTTCAAGTGTGA 71676894 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | || || || || || ||||| Sbjct 71676895 TGGTCTTTCCCGTCAGAGTCTTCACGAAGATTTGCAT 71676931 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| ||||||||||| || || || || |||||||| || || || Sbjct 64494124 TCCACCCCTGAGCCTCAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGC 64494183 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || |||||| | |||| |||||||| || || || Sbjct 64494184 TAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGG 64494243 Query 29679 AATACCCTCTTTGTCTTG 29696 ||| ||||| ||||| || Sbjct 64494244 AATGCCCTCCTTGTCCTG 64494261 >seq4 Length=191835039 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | || || ||||| || ||||||||||| ||||| ||| Sbjct 68254231 CCTCCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTTTGAATGTTGTAATCTGCA 68254172 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || |||||| | || | | ||||| || || ||| Sbjct 68254171 AGCGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGA 68254112 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| |||||| | || | || |||||| || || Sbjct 68254111 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATCGTATCAGAAGACTCCACC 68254052 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||||| || || || ||||| || | || || ||||| |||||||| | ||| Sbjct 68254051 TCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCATCTGAAA 68253999 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||||||||| |||||||| ||||| |||| |||| | ||| || || || ||||| Sbjct 68257604 GTGGATTCTTTCTGAATGTTGTAATCAGCAAAAGTGCAACTATCCTCAAGCTGCTTGCCG 68257545 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | || | || ||||| | || ||||||| || ||||| || ||| || ||| Sbjct 68257544 GCAAAGATAAGTCGCTGCTGGTTTGGATGAATACCTTCATTGTCCTG-AATCTTGCCTTG 68257486 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 || | || | |||||| || || || | || || || || |||||||| | || Sbjct 68257485 GCATTGTCAATAGTGTCCGATGACTCCACCACGAGGGTGATGGTCTTGCCAGTGAGAGTC 68257426 Query 29770 TTAACAAATATCTGCAT 29786 || ||||| |||||||| Sbjct 68257425 TTCACAAAGATCTGCAT 68257409 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || || ||||||| || || || ||||| || || ||||| || || || Sbjct 68254688 TCCACCACGCAGGCGGAGCACCAGGTGCAGGGTTGATTCCTTCTGGATGTTGTAGTCGGC 68254629 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| || || | || |||||||| | || | | ||||| ||||| || Sbjct 68254628 AAGAGTGCGGCCGTCCTCCAACTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGG 68254569 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||||||||| || | || || ||| | || | || ||||| || || Sbjct 68254568 AATACCCTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATTGTATCAGATGACTCCAC 68254509 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || | ||| || || || |||||||| Sbjct 68254508 CTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 68254461 >seq7 Length=154015841 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | || || || || || || || || || || || || | |||||| ||| Sbjct 60356643 AGCACAAGGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGCGAGGGTGCGGCCATCC 60356702 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||||||||| | || | | ||||| ||||||||||| ||||| ||||| Sbjct 60356703 TCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 60356762 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || ||| | || | ||||| || || || ||||| || || || Sbjct 60356763 TGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGGACTCGACCTCAAGCGTGATGGTC 60356822 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| | ||| || || || |||||||| Sbjct 60356823 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 60356854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || ||||| || ||||| || ||||| || || || | |||||| Sbjct 36806751 CGGAGCACCAGGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCG 36806692 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| |||||||| || ||||| || Sbjct 36806691 TCCTCCAGCTGCTTGCCAGCGAAGATGAGGCACTGCTGGTCCGGCGGGATGCCCTCCTTA 36806632 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || || |||||| | || | ||||| || || || || || || Sbjct 36806631 TCCTG-AATCTTAGTCTTGACATTGTCGATGGTGTCGCTGCTCTCCACCTCGAGCGTGAT 36806573 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | ||| || || || ||||||||||| Sbjct 36806572 CGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 36806534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385123476519849