Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq8759 93.3 4e-14 seq5 82.4 7e-11 >seq8759 Length=1216561 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 151105 ATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGC 151164 ||||||||| ||||||| ||||||||| || || | || |||||||| ||| | ||||| Sbjct 960069 ATCGGCCAAGCCTTGAACGCCTATGCCAATTGGCCTGTGACGCATATTTGATCTCTTTGC 960010 Query 151165 AGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 151203 ||| |||| ||| ||| |||| |||||||||||| || Sbjct 960009 AGTCTCAACAGGATAGTAATTAATATCAATAATTTTGTT 959971 >seq5 Length=158699395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTG 137267 |||| ||||| ||||| || ||||||||||| ||| | |||| || ||||| || Sbjct 71676957 TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCT-AAGGTGCGGCCATCCTCGAGCTG 71677015 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 || |||||| |||| ||||| |||||||| || || ||||| || ||||| ||| || Sbjct 71677016 CTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTT 71677075 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 || | | || | ||||||| | || || || | || | ||||| || || Sbjct 71677076 CGCCTTCACATTGTCGATTGTGTCTGAAGACTCAACCTCCAGCGTGATGGTCTTTCCAGT 71677135 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 ||| || || || || || ||||| Sbjct 71677136 CAAGGTCTTCACAAAGATCTGCAT 71677159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488419488454800