Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq13957 100 9e-16 seq8381 95.1 4e-14 >seq13957 Length=1900 Score = 100 bits (110), Expect = 9e-16 Identities = 117/154 (76%), Gaps = 7/154 (5%) Strand=Plus/Minus Query 309202 GATATTGCTTTAGGGAATGGTA---TACCAAAAGGTCGTATTATTGAGTTTTTTGGGGCA 309258 ||||| |||||||| | |||| ||||||||||||||||||||||| ||| ||| | Sbjct 514 GATATCGCTTTAGGTATTGGTGGATTACCAAAAGGTCGTATTATTGAGATTTATGGTCCT 455 Query 309259 GAATCTTCAGGTAAAAC-ACTTTG-CGCTACACGAGCAATGGCTCAAGTGCAACAACAAG 309316 ||||| || |||||||| || || | | || |||||| |||||| ||| || | | Sbjct 454 GAATCATCTGGTAAAACAACAATGACATTGCA--AGCAATTGCTCAATGTCAAAAAAATG 397 Query 309317 GTGGTATTTGTGCTTTAATAGATATGGAACATGC 309350 |||||| |||||| || || ||| |||||||| Sbjct 396 GTGGTACTTGTGCATTCATCGATGCTGAACATGC 363 >seq8381 Length=1680 Score = 95.1 bits (104), Expect = 4e-14 Identities = 183/270 (68%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822 |||| || | ||| |||| ||||| ||||| ||||| || ||| ||||||||||| | || Sbjct 272 TAATATTTTATTAATTGGACCTACAGGTTCTGGTAAGACTTTACTTGCTCAAACACTTGC 213 Query 188823 TGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTA 188882 | | | |||| ||| | ||||| | ||||| || | | || ||||| ||||| Sbjct 212 ACGTTTACTTGATGTTCCTTTTGCTATGGCAGATGCGACAACACTTACCGAAGCGGGTTA 153 Query 188883 TGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATAT 188942 || ||||||||||| ||||| | ||| || | ||| || ||||| ||| | Sbjct 152 CGTGGGTGAAGATGTTGAAAATATCGTGCAAAAATTGCTGCAAAAGGCAGATTATGATGT 93 Query 188943 CGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATC 189002 || ||| || || ||| | ||||| |||||| | || || || | | || || Sbjct 92 AGAGAAAGCTCAAAAAGGCATTATCTATATTGATGAAATCGACAAGATCACGCGTAAGTC 33 Query 189003 AGAAAGCACATCCATTACCCGAGATGTATC 189032 || | |||| ||||| || ||||| || Sbjct 32 TGAGAATCCATCGATTACTCGCGATGTTTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591494538779072