Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 3e-13 seq1 91.5 3e-13 >seq4 Length=191835039 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/170 (74%), Gaps = 10/170 (6%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||||||| || |||||||||||||| |||| ||| Sbjct 61405125 GATTTTGTTCTTTTCAATCGGCAACCAAGTCTTCATAAAATGTCTATCATGGGGCATCGC 61405066 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAAT--GTAAGTG-CTTGTACGCCTT 305438 ||||| ||||| | | || || || || ||| || ||| ||| | || | Sbjct 61405065 ATCAAA--ATTATGCCCTACTCAACTTTCCGGTTGAATTTGTCAGTCACTT---CACCAT 61405011 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||| ||||||||||| |||||||||||||||||||| || || ||| Sbjct 61405010 ACAATGCTGATTTTGATGGGGATGAAATGAATATGCATGTCCCCCAGTCA 61404961 >seq1 Length=275477322 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||||||| || |||||||||||||| |||| ||| Sbjct 58600482 GATTTTGTTCTTTTCAATCGGCAACCAAGTCTACATAAAATGTCTATTATGGGGCATCGT 58600541 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 ||||| ||||| | | || || || || ||| | || | | | || || | Sbjct 58600542 ATCAAA--ATTATGCCCTACTCAACTTTCCGGTTGAATTTGTCTGTTACTTCACCATACA 58600599 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||| ||||||||||| |||||||||||||||||||| || || || Sbjct 58600600 ATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCCCAGTC 58600645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186502764070829