Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq7 104 2e-17
seq5 98.7 7e-16
seq2 89.7 3e-13
>seq7
Length=154015841
Score = 104 bits (114), Expect = 2e-17
Identities = 169/240 (70%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||||| || ||| | ||||| || || ||| ||| ||||| |||
Sbjct 60356388 AAAATCTGCATGCCACCTCGCAGACGAAGCACCAGGTGAAGGGTGGACTCCTTTTGGATG 60356447
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
|||||||| | || ||||| | || ||||| || || || ||||| || | |||||||
Sbjct 60356448 TTGTAATCAGCAAGGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATGAGACGCTGC 60356507
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|| ||| | || | || || ||||| || || ||| |||| ||| | |||||
Sbjct 60356508 TGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTC-ACATTGTCAATTGTGTC 60356566
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| ||||| || | ||||| || || || || | || || ||||||||||||||
Sbjct 60356567 CGAGGACTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 60356626
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || || ||| || || |||||||| |||| ||| ||||| |||| ||
Sbjct 37434938 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 37434997
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| || || ||||| || || | |||||||| ||| |||| | || || || ||
Sbjct 37434998 TAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTATCCTG 37435057
Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
||| || || | | | | ||||||||| ||||| || | ||||||||| ||
Sbjct 37435058 AATCTTGACCTTGACGTTGTTAATGGTGTCGCTGCTCTCCACCTCGAGCGTGATCGTCTT 37435117
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753
|| || | ||| || |||||||||||||| |||
Sbjct 37435118 CCCCGTCAGCGTCTTCACAAAGATCTGCATGGTT 37435151
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || || |||||| || |||||||| |||| ||| ||||| |||| ||
Sbjct 36806746 CACCAGGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 36806687
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || || || || || | | |||||| || |||| | || || || ||
Sbjct 36806686 CAGCTGCTTGCCAGCGAAGATGAGGCACTGCTGGTCCGGCGGGATGCCCTCCTTATCCTG 36806627
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
||| || || | |||| ||| | ||||||||| ||||| || | ||||||||| |
Sbjct 36806626 AATCTTA-GTCTTGACATTGTCGATGGTGTCGCTGCTCTCCACCTCGAGCGTGATCGTCT 36806568
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || || |||||||||||
Sbjct 36806567 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 36806537
>seq5
Length=158699395
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||||| | | ||| | || || || |||||| || ||||||||||| |
Sbjct 71676933 CCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCT 71676992
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| ||||| | || || | || ||||| ||||| || | ||||||||||||| | ||
Sbjct 71676993 AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGA 71677052
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| ||| ||| ||| |||| ||| | ||||| || || ||
Sbjct 71677053 ATGCCCTCCTTGTCTTGAATCTTCGCCTTC-ACATTGTCGATTGTGTCTGAAGACTCAAC 71677111
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||| || || || || || || || ||||||||||||||
Sbjct 71677112 CTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 71677159
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
||||| ||| |||||| || |||||||| || | | ||||| | || || | ||
Sbjct 71677185 TGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGC 71677244
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| || ||||| ||||| |||||||| || | || | ||||| ||||| ||| ||
Sbjct 71677245 TTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTT- 71677303
Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|| || |||| |||| ||||| || || || |||| ||||| || || |||||
Sbjct 71677304 TGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATAGTCTTGCCTGT 71677363
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
| || || ||||||||||||||
Sbjct 71677364 GAGGGTCTTGACAAAGATCTGCAT 71677387
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
||||| ||| |||||| || |||||||| || | | ||||| | || || | ||
Sbjct 71682018 TGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGC 71682077
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| || ||||| ||||| |||||||| || | || | ||||| ||||| ||| ||
Sbjct 71682078 TTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTT- 71682136
Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|| || |||| |||| ||||| || || || |||| ||||| || || |||||
Sbjct 71682137 TGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATAGTCTTGCCTGT 71682196
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
| || || ||||||||||||||
Sbjct 71682197 GAGGGTCTTGACAAAGATCTGCAT 71682220
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||||| | | ||| | || || || |||||| || |||||||| || |
Sbjct 71681766 CCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAGTCAGCT 71681825
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| ||||| | || || | || ||||| ||||| || | ||||||||||||| | ||
Sbjct 71681826 AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGA 71681885
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| ||| ||| ||| |||| ||| | ||||| || || ||
Sbjct 71681886 ATGCCCTCCTTGTCTTGAATCTTCGCCTTC-ACATTGTCGATTGTGTCTGAAGACTCAAC 71681944
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||| || || || || || || || ||||| ||||||||
Sbjct 71681945 CTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 71681992
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
|||||| || || ||| ||| || || |||||||| || | || ||||| | || ||
Sbjct 81635951 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 81635892
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || |||||||| || | |||||||| ||| | || | || || |||||
Sbjct 81635891 CAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 81635832
Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| ||| |||| | | |||| ||||||| || ||||| || | || || || |
Sbjct 81635831 GATCTTCGCCTTCA-CGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTAATGGTCT 81635773
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | || || || ||||||||||||
Sbjct 81635772 TGCCAGTGAGGGTCTTGACGAAGATCTGCATA 81635741
>seq2
Length=243061704
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| |||| || | |||| || || |||||||| || || ||||||||||| |
Sbjct 229073583 CCACCCCTCAGGCGGAGAACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGCA 229073524
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| |||| |||| || || |||||||| |||| | |||||| || | ||
Sbjct 229073523 AGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 229073464
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | || | ||| | ||||||| || |||||
Sbjct 229073463 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 229073405
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || |||||||||||
Sbjct 229073404 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 229073357
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| |||||||| | ||||| || || |||||||| || || ||||||||||| | |
Sbjct 233057022 CCACCCCTCAAACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCG 233056963
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | || || || || || || | | |||||| || | ||
Sbjct 233056962 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 233056903
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | |||| ||| | |||||| || |||||
Sbjct 233056902 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCAGACGACTCCAC 233056844
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || || |||||||||||
Sbjct 233056843 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 233056796
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || |||||||| || || ||||||||||| | || || || |||| ||
Sbjct 229073338 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTCCTC 229073279
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| || || |||||||| |||| | |||||| || | || | || || |||||
Sbjct 229073278 GAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 229073219
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || |||| || | ||| | |||||| || ||||| || | ||||| || |
Sbjct 229073218 GATCTTGGCTTTC-ACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCT 229073160
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || ||||||||||||||
Sbjct 229073159 TGCCAGTGAGGGTCTTCACAAAGATCTGCAT 229073129
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| |||| || | ||||| || || |||||||| || || ||||| ||||| |
Sbjct 233057250 CCACCCCTCAGGCGGAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTATAATCAGCA 233057191
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| |||| |||| || || || || || |||| ||||||||| || | ||
Sbjct 233057190 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 233057131
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698
| || || ||||| || || || | ||| ||| | |||||| ||| ||
Sbjct 233057130 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCGATGGTGTCAGAGCTC---TC 233057075
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || || || || || || || || |||||||||||
Sbjct 233057074 AACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 233057024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328622320034880
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