Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq5 98.7 7e-16 seq2 89.7 3e-13 >seq7 Length=154015841 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||||| || ||| | ||||| || || ||| ||| ||||| ||| Sbjct 60356388 AAAATCTGCATGCCACCTCGCAGACGAAGCACCAGGTGAAGGGTGGACTCCTTTTGGATG 60356447 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || ||||| | || ||||| || || || ||||| || | ||||||| Sbjct 60356448 TTGTAATCAGCAAGGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATGAGACGCTGC 60356507 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | || || ||||| || || ||| |||| ||| | ||||| Sbjct 60356508 TGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTC-ACATTGTCAATTGTGTC 60356566 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || | ||||| || || || || | || || |||||||||||||| Sbjct 60356567 CGAGGACTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 60356626 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 37434938 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 37434997 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || || | |||||||| ||| |||| | || || || || Sbjct 37434998 TAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTATCCTG 37435057 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||| || || | | | | ||||||||| ||||| || | ||||||||| || Sbjct 37435058 AATCTTGACCTTGACGTTGTTAATGGTGTCGCTGCTCTCCACCTCGAGCGTGATCGTCTT 37435117 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || || | ||| || |||||||||||||| ||| Sbjct 37435118 CCCCGTCAGCGTCTTCACAAAGATCTGCATGGTT 37435151 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || |||||| || |||||||| |||| ||| ||||| |||| || Sbjct 36806746 CACCAGGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 36806687 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || || || || | | |||||| || |||| | || || || || Sbjct 36806686 CAGCTGCTTGCCAGCGAAGATGAGGCACTGCTGGTCCGGCGGGATGCCCTCCTTATCCTG 36806627 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || || | |||| ||| | ||||||||| ||||| || | ||||||||| | Sbjct 36806626 AATCTTA-GTCTTGACATTGTCGATGGTGTCGCTGCTCTCCACCTCGAGCGTGATCGTCT 36806568 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 36806567 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 36806537 >seq5 Length=158699395 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| | | ||| | || || || |||||| || ||||||||||| | Sbjct 71676933 CCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCT 71676992 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | || ||||| ||||| || | ||||||||||||| | || Sbjct 71676993 AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGA 71677052 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||| ||| |||| ||| | ||||| || || || Sbjct 71677053 ATGCCCTCCTTGTCTTGAATCTTCGCCTTC-ACATTGTCGATTGTGTCTGAAGACTCAAC 71677111 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || || || || |||||||||||||| Sbjct 71677112 CTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 71677159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 ||||| ||| |||||| || |||||||| || | | ||||| | || || | || Sbjct 71677185 TGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGC 71677244 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| ||||| |||||||| || | || | ||||| ||||| ||| || Sbjct 71677245 TTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTT- 71677303 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || |||| |||| ||||| || || || |||| ||||| || || ||||| Sbjct 71677304 TGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATAGTCTTGCCTGT 71677363 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 71677364 GAGGGTCTTGACAAAGATCTGCAT 71677387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 ||||| ||| |||||| || |||||||| || | | ||||| | || || | || Sbjct 71682018 TGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGC 71682077 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| ||||| |||||||| || | || | ||||| ||||| ||| || Sbjct 71682078 TTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTT- 71682136 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || |||| |||| ||||| || || || |||| ||||| || || ||||| Sbjct 71682137 TGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATAGTCTTGCCTGT 71682196 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 71682197 GAGGGTCTTGACAAAGATCTGCAT 71682220 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| | | ||| | || || || |||||| || |||||||| || | Sbjct 71681766 CCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAGTCAGCT 71681825 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | || ||||| ||||| || | ||||||||||||| | || Sbjct 71681826 AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGA 71681885 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||| ||| |||| ||| | ||||| || || || Sbjct 71681886 ATGCCCTCCTTGTCTTGAATCTTCGCCTTC-ACATTGTCGATTGTGTCTGAAGACTCAAC 71681944 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || || || || ||||| |||||||| Sbjct 71681945 CTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 71681992 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || |||||||| || | || ||||| | || || Sbjct 81635951 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 81635892 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || |||||||| || | |||||||| ||| | || | || || ||||| Sbjct 81635891 CAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 81635832 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | |||| ||||||| || ||||| || | || || || | Sbjct 81635831 GATCTTCGCCTTCA-CGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTAATGGTCT 81635773 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || |||||||||||| Sbjct 81635772 TGCCAGTGAGGGTCTTGACGAAGATCTGCATA 81635741 >seq2 Length=243061704 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | |||| || || |||||||| || || ||||||||||| | Sbjct 229073583 CCACCCCTCAGGCGGAGAACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGCA 229073524 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || |||||||| |||| | |||||| || | || Sbjct 229073523 AGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 229073464 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | ||||||| || ||||| Sbjct 229073463 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 229073405 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 229073404 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 229073357 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | ||||| || || |||||||| || || ||||||||||| | | Sbjct 233057022 CCACCCCTCAAACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCG 233056963 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || || || || || || | | |||||| || | || Sbjct 233056962 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 233056903 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | |||||| || ||||| Sbjct 233056902 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCAGACGACTCCAC 233056844 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 233056843 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 233056796 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || |||||||| || || ||||||||||| | || || || |||| || Sbjct 229073338 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTCCTC 229073279 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || |||||||| |||| | |||||| || | || | || || ||||| Sbjct 229073278 GAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 229073219 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| || | ||| | |||||| || ||||| || | ||||| || | Sbjct 229073218 GATCTTGGCTTTC-ACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCT 229073160 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 229073159 TGCCAGTGAGGGTCTTCACAAAGATCTGCAT 229073129 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || || |||||||| || || ||||| ||||| | Sbjct 233057250 CCACCCCTCAGGCGGAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTATAATCAGCA 233057191 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || || || |||| ||||||||| || | || Sbjct 233057190 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 233057131 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| || || || | ||| ||| | |||||| ||| || Sbjct 233057130 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCGATGGTGTCAGAGCTC---TC 233057075 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || || ||||||||||| Sbjct 233057074 AACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 233057024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328622320034880