Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq2 82.4 7e-11 >seq5 Length=158699395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||||||| |||||||||||||| ||| | ||| || ||| |||||||| || || | Sbjct 71681799 GACTCTTTCTGAATGTTGTAGTCAGCT-AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGC 71681857 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| |||||||| |||||||| || ||||| || || || ||| || |||| Sbjct 71681858 AAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCAC 71681917 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || || | | ||| || || | ||| | || || ||||||| || || Sbjct 71681918 ATTGTCGATTGTGTCTGAAGACTCAACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTT 71681977 Query 132109 TATGAAAATCTGCATGACT 132127 | |||||||||||| || Sbjct 71681978 CACAAAAATCTGCATGCCT 71681996 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||||||| ||||||||||| || ||| | ||| || ||| |||||||| || || | Sbjct 71676966 GACTCTTTCTGAATGTTGTAATCAGCT-AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGC 71677024 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| |||||||| |||||||| || ||||| || || || ||| || |||| Sbjct 71677025 AAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCAC 71677084 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || || | | ||| || || | ||| | || || ||||||| || || Sbjct 71677085 ATTGTCGATTGTGTCTGAAGACTCAACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTT 71677144 Query 132109 TATGAAAATCTGCATGACT 132127 | || ||||||||| || Sbjct 71677145 CACAAAGATCTGCATGCCT 71677163 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || |||||||| ||||| | || || ||| || Sbjct 71681556 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTCCGGCCATCCTCC 71681615 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| || ||||| || ||||| || ||||||||||| || | Sbjct 71681616 AGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCTTTGTCTTGA 71681675 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||||| | || | || || | | ||| ||||| | || | || || Sbjct 71681676 ATCTTTGCTTTCACATTATCAATTGTGTCAGAAGACTCAACTTCAAGTGTGATGGTCTTT 71681735 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||||||||| || | ||| || |||||| Sbjct 71681736 CCAGTCAGAGTCTTCACGAAGATTTGCATG 71681765 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | | ||||| || || ||||||||||| || ||| Sbjct 81635963 ACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGT 81635904 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| | |||| || ||||| || ||||| || ||||| Sbjct 81635903 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCC 81635844 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || |||| | |||||| |||| Sbjct 81635843 CTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAG 81635784 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| || || || | ||| |||||||| Sbjct 81635783 GGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 81635742 >seq2 Length=243061704 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAG-ACCGCCACGCTGGCCGAGCGCAT 46834 ||||| | ||||||||| ||||||||| ||| | | ||| ||| |||||| | Sbjct 119861104 AAGGCGGACTGGGCCATGCGGTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGACT 119861049 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || || |||||| || |||||| || | Sbjct 119861048 CGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTG 119860989 Query 46895 CATTAA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCG 46953 | || || | | ||| | ||||||||||| || ||| |||||| | ||||| |||| Sbjct 119860988 GCTCAAGAAGCGAGGGC-TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCG 119860930 Query 46954 ACGAAGGACTACACACGGACTTTGCGTGTCTC 46985 |||| || || ||| ||||| ||||| ||| Sbjct 119860929 ACGAGGGCCTGCACTGCGACTTCGCGTGCCTC 119860898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476489729678040