Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8759 93.3 6e-14 seq3 93.3 6e-14 seq2 89.7 7e-13 >seq8759 Length=1216561 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| |||| | | ||| |||| ||||||| Sbjct 958508 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATACCA 958449 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| ||||||||||| ||| ||||| || | || ||||| || || || Sbjct 958448 TTTGATGCTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATGTTGTGAACCGAG 958389 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || || || || Sbjct 958388 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCGTAGATT 958329 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 958328 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 958288 >seq3 Length=300915289 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| ||||| |||||||| || | || | ||||| || || ||||| Sbjct 250095908 GCAGGCGAAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 250095967 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 250095968 CCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 250096026 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 250096027 AGATGCCCTCGAC 250096039 >seq2 Length=243061704 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCG 69854 ||| |||| ||| ||||| ||| | ||||||||||| ||| ||||| || | || || Sbjct 87114701 CATAGGAACAATTCCATTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACG 87114760 Query 69855 AATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 |||||| || || | ||| |||||||| || ||| || | |||||| || Sbjct 87114761 AATATTGTGAACTGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCCTT 87114820 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||| || ||||| ||||| |||||| ||||| | || |||||||| Sbjct 87114821 CAGAGTATCATAAATTCCCTCAATGCTGTCATCTTTCATGCAGATGAGGAAACAGCT 87114877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 119860901 GCACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 119860960 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| ||| | || || |||| Sbjct 119860961 GCCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 119861019 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||||||| || || || || || || |||| ||| Sbjct 119861020 AGATGCCCTCGACGCAGGCGAACGCGACGAGTCGCTC 119861056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686733732705960