Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-12 seq7 82.4 6e-11 >seq2 Length=243061704 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||||||| ||||| || || || || || |||||||| | || | |||||| Sbjct 49653019 CAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACATG 49652960 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||||| || || || || ||||| || ||| |||| ||||| ||||||||||| || Sbjct 49652959 GGACTTGGTGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATATATGATTGCTCAA 49652900 Query 41199 GTT 41201 ||| Sbjct 49652899 GTT 49652897 >seq7 Length=154015841 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||||||| ||||| || || || || || |||||||| | || | |||||| Sbjct 4014135 CAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACATG 4014076 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||||| || || || || ||||| || ||| |||| ||||| || |||||||| || Sbjct 4014075 GGACTTGGTGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGCTCAA 4014016 Query 41199 GTT 41201 ||| Sbjct 4014015 GTT 4014013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397357235785945