Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 5e-13
seq3 89.7 2e-12
>seq2
Length=243061704
Score = 91.5 bits (100), Expect = 5e-13
Identities = 297/451 (66%), Gaps = 18/451 (4%)
Strand=Plus/Minus
Query 443428 TCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTC- 443486
|| |||||||||| || | |||||| ||||| ||||| || | | |||| |||
Sbjct 119861331 TCCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCGCGCTTCA 119861272
Query 443487 --TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGG 443544
| ||| || || | ||||||||||| |||||||| ||||| ||| || |
Sbjct 119861271 TGTCCGACGTGCAGGT---CGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 119861215
Query 443545 AGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATTCCGA-ACGAAGAC 443603
||||||| ||| | ||| | ||| | | || || |||| || |||| ||| | |
Sbjct 119861214 AGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACT-TACATCCGCGACGGCGCC 119861156
Query 443604 GAACAGCGGTCCATCTTCTCATCGTTCAT-GACCACG--CCAGGCATCACTGAAAAGACT 443660
|| || | || ||| || || ||| ||| || || | | || ||| |
Sbjct 119861155 GAGAAG--GACCGCCTTTTCCGCGC-CATCGACACCGTCCCCGCCGTCCGCCGCAAGGCG 119861099
Query 443661 CGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCT 443720
|||||| | | |||| |||| | | | | |||||| ||||||||| |||||
Sbjct 119861098 GACTGGGCCATGCGGTGGATCGACGGCGGGGAGC---GCTTCGCCGAGCGACTCGTCGCG 119861042
Query 443721 TTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAA 443780
|| || ||||| || | || || ||| ||| || ||||||||||| | ||
Sbjct 119861041 TTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 119860983
Query 443781 AAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGG 443840
||||| || || |||| || || ||||| ||||| || ||| || ||||||||
Sbjct 119860982 GAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 119860923
Query 443841 TTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871
|||| ||||||||||| || || ||||||
Sbjct 119860922 CCTGCACTGCGACTTCGCGTGCCTCCTCTAC 119860892
>seq3
Length=300915289
Score = 89.7 bits (98), Expect = 2e-12
Identities = 125/174 (72%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757
|||||| |||||| || ||||| || || ||||| || | || || ||| ||
Sbjct 250096071 GCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 250096012
Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817
| || ||||||||||| | || ||||| || || |||| || || ||||| |||
Sbjct 250096011 TCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAAC 250095953
Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871
|| || ||| || |||||||| | ||||||||||||||||| || ||||||
Sbjct 250095952 GAGCTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCTCTAC 250095899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1587921072534105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |