Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 5e-13 seq3 89.7 2e-12 >seq2 Length=243061704 Score = 91.5 bits (100), Expect = 5e-13 Identities = 297/451 (66%), Gaps = 18/451 (4%) Strand=Plus/Minus Query 443428 TCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTC- 443486 || |||||||||| || | |||||| ||||| ||||| || | | |||| ||| Sbjct 119861331 TCCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCGCGCTTCA 119861272 Query 443487 --TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGG 443544 | ||| || || | ||||||||||| |||||||| ||||| ||| || | Sbjct 119861271 TGTCCGACGTGCAGGT---CGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 119861215 Query 443545 AGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATTCCGA-ACGAAGAC 443603 ||||||| ||| | ||| | ||| | | || || |||| || |||| ||| | | Sbjct 119861214 AGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACT-TACATCCGCGACGGCGCC 119861156 Query 443604 GAACAGCGGTCCATCTTCTCATCGTTCAT-GACCACG--CCAGGCATCACTGAAAAGACT 443660 || || | || ||| || || ||| ||| || || | | || ||| | Sbjct 119861155 GAGAAG--GACCGCCTTTTCCGCGC-CATCGACACCGTCCCCGCCGTCCGCCGCAAGGCG 119861099 Query 443661 CGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCT 443720 |||||| | | |||| |||| | | | | |||||| ||||||||| ||||| Sbjct 119861098 GACTGGGCCATGCGGTGGATCGACGGCGGGGAGC---GCTTCGCCGAGCGACTCGTCGCG 119861042 Query 443721 TTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAA 443780 || || ||||| || | || || ||| ||| || ||||||||||| | || Sbjct 119861041 TTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 119860983 Query 443781 AAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGG 443840 ||||| || || |||| || || ||||| ||||| || ||| || |||||||| Sbjct 119860982 GAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 119860923 Query 443841 TTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 |||| ||||||||||| || || |||||| Sbjct 119860922 CCTGCACTGCGACTTCGCGTGCCTCCTCTAC 119860892 >seq3 Length=300915289 Score = 89.7 bits (98), Expect = 2e-12 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| || ||||| || || ||||| || | || || ||| || Sbjct 250096071 GCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 250096012 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || ||||||||||| | || ||||| || || |||| || || ||||| ||| Sbjct 250096011 TCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAAC 250095953 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || |||||||| | ||||||||||||||||| || |||||| Sbjct 250095952 GAGCTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCTCTAC 250095899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587921072534105