Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 2e-20
seq3 113 6e-20
seq5 105 8e-18
seq8759 91.5 2e-13
>seq2
Length=243061704
Score = 114 bits (126), Expect = 2e-20
Identities = 306/455 (67%), Gaps = 16/455 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| ||||| |||||||| |||||||||||||| || | || ||| |||||
Sbjct 119860617 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 119860676
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACG 122489
|||| || || || ||||| | || || |||||| | | |||| || ||
Sbjct 119860677 CAGTCGAAGGGGTTGGCGGCGTTGTACATCTTGTTGCACCCTAG-TGCCATGAGCAGGCG 119860735
Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548
|| | || |||| ||||||||| ||| | | |||||| |||| ||| | ||
Sbjct 119860736 GTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCGAC 119860795
Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608
||||| ||||| ||| |||| | ||| || || || || || ||||| ||
Sbjct 119860796 G-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTCGC 119860854
Query 122609 GGATAGTTTCGGTAGTGGGTCTA--TTAC-GCAAAGT--CTTGAAGAGCTC-CACGGCAA 122662
||| ||| | | | || | || | || || || | |||| |||| | |
Sbjct 119860855 GGACG----CGGGACTCG-TCGAGCTTGCTGCGGAGGAGCTCGTAGAGGAGGCACG-CGA 119860908
Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722
| || ||| || ||||| || ||||| || || || || |||||| || || ||||
Sbjct 119860909 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 119860968
Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782
|||| || |||||||| | ||| | || |||||||| || || ||||||||||| ||||
Sbjct 119860969 TGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 119861028
Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817
| || || || ||||| | || || |||||||||
Sbjct 119861029 CGACGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 119861063
>seq3
Length=300915289
Score = 113 bits (124), Expect = 6e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
||||| ||||| || ||||| || || || || |||||| || || |||||||| ||
Sbjct 250095924 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGGCCG 250095983
Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790
|||||||| | ||| | || |||||||| || || ||||||||||| ||||| || ||
Sbjct 250095984 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 250096043
Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAG 122817
|| || || | ||||| |||||||||
Sbjct 250096044 GCGAAGGCGACGAGGCGCTCGGCGAAG 250096070
>seq5
Length=158699395
Score = 105 bits (116), Expect = 8e-18
Identities = 192/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| || || || | ||| | || ||| | ||| || | | |||||||| |||
Sbjct 71162737 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 71162796
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
||||| | ||| ||||| | || || ||||||||||| || | | ||| || |
Sbjct 71162797 ATAACAATAATTCCAGTGTTTCCCTCGAAACCATCCATCTCAGTCAACAGTTGGTTGAGA 71162856
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632
|| || || || ||||||||| | | ||| | || | |||| | || || |||
Sbjct 71162857 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAGCA 71162916
Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692
||||| ||||||| || || || || || ||| || ||| | | || |||||
Sbjct 71162917 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCA 71162976
Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733
||||| || ||||| |||||||||||||||||||||||
Sbjct 71162977 CGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAA 71163017
Score = 96.9 bits (106), Expect = 4e-15
Identities = 213/317 (67%), Gaps = 2/317 (1%)
Strand=Plus/Plus
Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597
||||||| |||||||| || | | || || || || || || ||||| || || |
Sbjct 85378177 CAAAGCCGTCCATCTCAGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCAC 85378236
Query 11598 G-CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | | ||||||| || ||| |||| || |||||||||||||| |||||||||||
Sbjct 85378237 CACCGAGC-CCAGCACCACGCTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATG 85378295
Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716
|| || || | ||| | || ||||| || || ||||| |||||||||||
Sbjct 85378296 CAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCG 85378355
Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776
|| || | ||| || || | | || | ||| || ||| || || | || ||
Sbjct 85378356 ACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCG 85378415
Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836
|||| ||| ||||| | |||||| || || || || ||| || |||| || ||
Sbjct 85378416 GCGACGGCACGGGCCAAGAGGGTTTTACCAGTCCCGGGCGGGCCGACGAGGAGACATCCC 85378475
Query 11837 CGGGGGATCTTGGCACC 11853
|||||||||||| ||
Sbjct 85378476 TTGGGGATCTTGGCTCC 85378492
>seq8759
Length=1216561
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || |||||||| ||||||||||| || ||||||| || || | ||| | ||
Sbjct 958198 TGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGA 958139
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
||||| | ||| |||| | | |||| |||||||||||| ||| || || | |
Sbjct 958138 GACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTATCCCCACCGAA 958079
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118
|||| ||| | ||||| |||||| |||| | | | ||||||||| || |||| |
Sbjct 958078 ACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCATCGAGC--TTCAAGAGGT 958021
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
| | |||| || || |||| |||||||||
Sbjct 958020 AAGACCTCTCCAGAGTCTTGAAACCAAAGTA 957990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627871938194400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |