Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq3 113 6e-20 seq5 105 8e-18 seq8759 91.5 2e-13 >seq2 Length=243061704 Score = 114 bits (126), Expect = 2e-20 Identities = 306/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | || ||| ||||| Sbjct 119860617 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 119860676 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || ||||| | || || |||||| | | |||| || || Sbjct 119860677 CAGTCGAAGGGGTTGGCGGCGTTGTACATCTTGTTGCACCCTAG-TGCCATGAGCAGGCG 119860735 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||||| ||| | | |||||| |||| ||| | || Sbjct 119860736 GTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCGAC 119860795 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | ||| || || || || || ||||| || Sbjct 119860796 G-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTCGC 119860854 Query 122609 GGATAGTTTCGGTAGTGGGTCTA--TTAC-GCAAAGT--CTTGAAGAGCTC-CACGGCAA 122662 ||| ||| | | | || | || | || || || | |||| |||| | | Sbjct 119860855 GGACG----CGGGACTCG-TCGAGCTTGCTGCGGAGGAGCTCGTAGAGGAGGCACG-CGA 119860908 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| || ||||| || ||||| || || || || |||||| || || |||| Sbjct 119860909 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 119860968 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 |||| || |||||||| | ||| | || |||||||| || || ||||||||||| |||| Sbjct 119860969 TGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 119861028 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 | || || || ||||| | || || ||||||||| Sbjct 119861029 CGACGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 119861063 >seq3 Length=300915289 Score = 113 bits (124), Expect = 6e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 250095924 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGGCCG 250095983 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 250095984 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 250096043 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 250096044 GCGAAGGCGACGAGGCGCTCGGCGAAG 250096070 >seq5 Length=158699395 Score = 105 bits (116), Expect = 8e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | || ||| | ||| || | | |||||||| ||| Sbjct 71162737 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 71162796 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | ||| ||||| | || || ||||||||||| || | | ||| || | Sbjct 71162797 ATAACAATAATTCCAGTGTTTCCCTCGAAACCATCCATCTCAGTCAACAGTTGGTTGAGA 71162856 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || || || || ||||||||| | | ||| | || | |||| | || || ||| Sbjct 71162857 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAGCA 71162916 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || || || || || ||| || ||| | | || ||||| Sbjct 71162917 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCA 71162976 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| || ||||| ||||||||||||||||||||||| Sbjct 71162977 CGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAA 71163017 Score = 96.9 bits (106), Expect = 4e-15 Identities = 213/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 ||||||| |||||||| || | | || || || || || || ||||| || || | Sbjct 85378177 CAAAGCCGTCCATCTCAGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCAC 85378236 Query 11598 G-CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | ||||||| || ||| |||| || |||||||||||||| ||||||||||| Sbjct 85378237 CACCGAGC-CCAGCACCACGCTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATG 85378295 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | ||| | || ||||| || || ||||| ||||||||||| Sbjct 85378296 CAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCG 85378355 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||| || || | | || | ||| || ||| || || | || || Sbjct 85378356 ACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCG 85378415 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 |||| ||| ||||| | |||||| || || || || ||| || |||| || || Sbjct 85378416 GCGACGGCACGGGCCAAGAGGGTTTTACCAGTCCCGGGCGGGCCGACGAGGAGACATCCC 85378475 Query 11837 CGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 85378476 TTGGGGATCTTGGCTCC 85378492 >seq8759 Length=1216561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| ||||||||||| || ||||||| || || | ||| | || Sbjct 958198 TGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGA 958139 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| | ||| |||| | | |||| |||||||||||| ||| || || | | Sbjct 958138 GACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTATCCCCACCGAA 958079 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| | ||||| |||||| |||| | | | ||||||||| || |||| | Sbjct 958078 ACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCATCGAGC--TTCAAGAGGT 958021 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | | |||| || || |||| ||||||||| Sbjct 958020 AAGACCTCTCCAGAGTCTTGAAACCAAAGTA 957990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627871938194400