Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 156 5e-33 seq3 150 2e-31 seq5 107 2e-18 >seq2 Length=243061704 Score = 156 bits (172), Expect = 5e-33 Identities = 314/453 (69%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 119860617 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 119860676 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | ||| | || | | |||| | | | | ||| || || Sbjct 119860677 CAGTCGAAGGGGTTGGCGGCGTTGTACATCTTGTTGCACCCTAGTGCCAT-GAGCAGGCG 119860735 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| |||||||| ||| | || |||||| |||| ||| | || Sbjct 119860736 GTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCGAC 119860795 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| | ||| |||||||| || || ||||| || Sbjct 119860796 G-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTCGC 119860854 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAAC 130021 | | | | ||| || | || | | |||| | || | |||| |||| | || Sbjct 119860855 GGACGCGGGACTC-GT-CGAGCT-TGCTGCGGAGGAGCTCGTAGAGGAGGCACG-CGAAG 119860910 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 119860911 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 119860970 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 119860971 AGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 119861030 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || |||||||| | ||| ||||| || ||| Sbjct 119861031 ACGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 119861063 Score = 109 bits (120), Expect = 7e-19 Identities = 371/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 13865 GTGAT-CGTTCCGTCGCCGTCACGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGC 13923 ||||| || ||| | |||| ||| | ||| ||||||| ||| || | |||||| || Sbjct 112811903 GTGATGCGGTCCTT-GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGC 112811961 Query 13924 CAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTC 13983 | ||| || || ||| || | || || | || | || ||| ||| || Sbjct 112811962 GAGGTCAGCGCCGCTGAACCCGGGGGTACGCATGGCCACCACGCTGAGCGACACGTCCGG 112812021 Query 13984 AGCCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGG 14042 ||| |||||||| | | || ||| || | | |||| ||| || |||||||| || Sbjct 112812022 GTCCAGCTTCTTGT-TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGG 112812080 Query 14043 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 14102 | ||| ||| ||| || || || ||||| || |||||||| || ||| |||| |||| Sbjct 112812081 GGAGGCCGACGCTGACCTGGCGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGA 112812140 Query 14103 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 14162 | || ||||| || || ||||| || | || ||| | ||| || || |||| Sbjct 112812141 TCTCGGGCCGGTTGGTGGCGGCGATCACGATGACGCCGCTGTCGCCGGAGAACCCGTCCA 112812200 Query 14163 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CC 14220 |||| |||| || || |||| || || || | || || ||| | || | | || Sbjct 112812201 TCTCCGTCAGCAGCTGGTTGAGCGTCTGCTCCCTCTCGTCGTTCCC--GCCGCCGATGCC 112812258 Query 14221 CGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT 14280 || | ||| || ||||||||||| | || |||||||| |||| || || || Sbjct 112812259 CGTCCCGCGCTGGCGGCCGACGGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTT 112812318 Query 14281 TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTC 14340 | ||| | |||| || ||||| | | || || || || ||||||||||| Sbjct 112812319 GGCCTTGGCCTTGTTGAAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACAAACATCTC 112812378 Query 14341 CACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTC 14399 | || | || ||| ||| | || |||||| ||| | || ||||||||||| Sbjct 112812379 GATGAACTCGGACCCGG-ACAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCT 112812437 Query 14400 GGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || |||||||||||||| || Sbjct 112812438 TCGCCAGCAGCGTCTTCCCCGTCCCCGG 112812465 >seq3 Length=300915289 Score = 150 bits (166), Expect = 2e-31 Identities = 314/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 250095624 TACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 250095683 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || |||||||| ||| | || | || | | ||| | |||| || || Sbjct 250095684 CAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGTGCCCCAG-CGCCATGAGCAGGCG 250095742 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| | || |||||| |||| ||| | || Sbjct 250095743 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGAC 250095802 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 250095803 G-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGATCTCGC 250095861 Query 129966 GAAT--GGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | |||| ||| | || | | |||| | | ||| | || ||| || ||| || Sbjct 250095862 GGACACGGTCCTCGT-CGAGCT-TGCTGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 250095916 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||||| |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 250095917 GTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCAT 250095976 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 250095977 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 250096036 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | ||| ||||| || ||| Sbjct 250096037 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 250096070 >seq5 Length=158699395 Score = 107 bits (118), Expect = 2e-18 Identities = 252/378 (67%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 || |||| || |||||||| | ||||| || || || || ||| || | ||| Sbjct 85378077 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGTGCTGAGTCGAGCACATCTGGC 85378136 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| || | |||| || || | | | ||||||| |||||||||||| Sbjct 85378137 CTGTTAGTCGCAGCAAGCACAATGACACCGCTGTTGCCCGCAAAGCCGTCCATCTCAGTC 85378196 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-GGCATACCACCCGCACTGCG 14229 ||||| || |||||||| || || | || || || || | | | || |||| || Sbjct 85378197 AAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 85378255 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||| ||||||||||| || || || || || | ||| Sbjct 85378256 CTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 85378315 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || |||| || || || || ||||| ||||| || || | ||| || || | Sbjct 85378316 CTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCGACGAAGAGCTCGACGAACTC 85378375 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || |||| || || ||| || ||| | || || |||| ||| ||||| | ||| Sbjct 85378376 GGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCGGCGACGGCACGGGCCAAGAG 85378435 Query 14410 GGTCTTCCCCGTCCCTGG 14427 ||| || || ||||| || Sbjct 85378436 GGTTTTACCAGTCCCGGG 85378453 Score = 105 bits (116), Expect = 8e-18 Identities = 195/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 || || ||||||||||||||||| ||||| |||| || || || | ||||||||| || Sbjct 71162821 TCGAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTCTGCTCCCTTTCATCATTTCCA 71162880 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| | || | |||| ||||||| || ||||||||||| | || || || Sbjct 71162881 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 71162940 Query 14270 CATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || ||| | | || | ||| ||| | ||| || ||||| ||||| ||||| Sbjct 71162941 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 71162999 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCAC 14387 ||||||||||||||||| | || | | ||| |||| || || || || || || | Sbjct 71163000 AACAAACATCTCCACAAACTCGGAGCCTGAA-ATTGAGAAAAATGGCACACCAGCCTCTC 71163058 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 |||| || || ||| || | || || || || || ||| Sbjct 71163059 CCGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTTCCAGGT 71163099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618277584058840