Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq3 149 7e-31 seq5 127 2e-24 seq6 91.5 2e-13 seq8759 86.0 7e-12 >seq2 Length=243061704 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||||||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 119861063 CTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 119861004 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||||||||| |||||||| || ||| |||||||||||| Sbjct 119861003 CTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 119860944 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 119860943 GCTCATCTCCCGCGACGAGGGCCTGCAC 119860916 >seq3 Length=300915289 Score = 149 bits (164), Expect = 7e-31 Identities = 121/147 (82%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 250096070 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 250096011 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 250096010 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGA 250095951 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCA 94943 ||| ||||| || |||||||| ||||| Sbjct 250095950 GCTCATCTCCCGCGACGAGGGCCTCCA 250095924 >seq5 Length=158699395 Score = 127 bits (140), Expect = 2e-24 Identities = 252/366 (69%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 71162737 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 71162796 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| ||| || |||||| | | |||||||||||||| ||||| |||||||| | Sbjct 71162797 ATAACAATAATTCCAGTGTTTCCCT--CGAAACCATCCATCTCAGTCAACAGTTGGTTGA 71162854 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 ||| || |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 71162855 GAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAG 71162914 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGA 9763 ||||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||| Sbjct 71162915 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGA 71162973 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || | || || ||||||||||||||||||||||| | | | | ||| || Sbjct 71162974 TCACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCGGAGCCTGAA-AT 71163032 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || || || ||| || || |||||||| || ||| || | ||| ||||| || Sbjct 71163033 TGAGAAAAATGGCACACCAGCCTCTCCCGCAATTGCCTTGGCAAGCAAAGTTTTACCAGT 71163092 Query 9883 ACCTGG 9888 || || Sbjct 71163093 TCCAGG 71163098 >seq6 Length=240577051 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||| || ||||||||||| || || | ||| | || ||||| ||| ||| | Sbjct 33888811 GCATCGATTTCATCAATGAATACAATACTAGGTGCACATTGTCGAGCTTCTTGAAATAAG 33888752 Query 9764 TCCCGTACAC-GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 | ||| || | | ||| || ||||||||||||||||||| |||| || ||||| | Sbjct 33888751 TTCCGCACCCTGGATGGT-CCAACACCAACAAACATCTCCATGAAGTCTGAACCGGAA-A 33888694 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | | |||||| |||| |||||| || ||| | ||| || || || || || |||| Sbjct 33888693 TAGACAAGAAGGGCACATCAGATTCTCCTGCAGTAGCTTTAGCAAGGAGCGTTTTCCCCG 33888634 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGC-GCCACTTCCAAAGTAT 9940 |||| || ||| | || || ||||| ||| || || || ||| ||| | ||| Sbjct 33888633 TACCAGGGGGGCCCACAAGAAGAGCACCCTTTGGTATTTTAGCTCCCAGTTCTTCA-TAT 33888575 Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||| || | ||| || |||| ||||| ||| Sbjct 33888574 TTCTTGGGGTTCTTTAGGAAATGCACAAATTC 33888543 >seq8759 Length=1216561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 104195 || |||| ||||| | || |||||| |||| || || |||| | || |||| || Sbjct 957972 AGGGACTTCGACTACGACTACTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCTTGAA- 958030 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 ||||||||| | | |||| |||||| ||||| | ||| | || | | || | Sbjct 958031 -GCTCGATGGGAAGGTTGTTGAAAGGCCACAGCACATGCTAATGAGGGTTTCGGTGGGGA 958089 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 | || |||||||||||| |||| | | |||| ||| | ||||| || | || Sbjct 958090 TACACAAGGAAGACATTGAGTCTGCCATCAAGACTTACCATCTCATGTCTCAGCGCTGGT 958149 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | | || || ||||||| || ||||||||||| |||||||| |||||| Sbjct 958150 TTACACATGCTTCACCAACGCTTTTCAATGCTGGCACACCAAGGCCCCAA 958199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583112148694360