Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 251 8e-62 seq2 199 4e-46 >seq3 Length=300915289 Score = 251 bits (278), Expect = 8e-62 Identities = 593/874 (68%), Gaps = 31/874 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 250096483 TTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 250096424 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | ||||||| |||||||| ||| ||| | | |||||| | ||| || Sbjct 250096423 ACGGCCGAGGAGGTTGACCTCTCCGCCGACGCGCGCCACTGGGACGCGGCGCTCTCCAAC 250096364 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 250096363 GACGAGCGCCACTTCATCTCTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 250096304 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | ||| ||| || |||||| | |||||||| || | Sbjct 250096303 CTCGAGAACCTCGCCTCCCGCTTCATGTCC---GACGTCCAGGTCGCCGAGGCGCGCGCC 250096247 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 250096246 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 250096188 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | || || ||| | ||||||| | || ||||| ||| | || || Sbjct 250096187 CGAGACGTACATCCGCGATGGCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCAT 250096128 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || |||||||||| ||||| || | | ||||| Sbjct 250096127 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGC-- 250096070 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 250096069 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 250096010 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| |||||||||||||| || | |||||||||||| Sbjct 250096009 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGAG 250095950 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT- 60151 || || ||||| ||||||||||||||| || || || || | | || | | |||| Sbjct 250095949 CTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGC-CTGCCTC-CTCTAC-GACCTC 250095893 Query 60152 ATTGGAAAAATGCCCTTCCAAGGA---TATTCACAAGATTGT-TCAGTGGGCTTGTGAAG 60207 | | | | || | | |||| | | | | |||| || | | | | | ||| Sbjct 250095892 CTCCGCAGCAAGCTC-GACGAGGACCGTGTCCGCGAGATCGTCGCCGACGCCGT-TGACA 250095835 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||| |||||||| || || ||||| || | ||| | || ||| ||| || Sbjct 250095834 TCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGGGC 250095775 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAG 60324 |||| |||||||| |||| ||||| |||||| |||||||| | | | | ||| Sbjct 250095774 TCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTG-GGGCACAAG 250095716 Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384 | || ||| ||| ||||| ||||||||||||||| ||||||| || | || | Sbjct 250095715 AA--GATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCA 250095658 Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||| |||||||| |||||||| || Sbjct 250095657 AGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTA 250095624 >seq2 Length=243061704 Score = 199 bits (220), Expect = 4e-46 Identities = 581/877 (66%), Gaps = 37/877 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || ||||| | |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 119861476 TTCCCCATACGCTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 119861417 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTAC--- 59678 | | ||| ||| | ||||| ||| ||| | |||||| || | | | Sbjct 119861416 ACGGCCGAAGAGGTGGACCTGTCCGCCGACGCCCGCCACTGGGACGAGTCCCTCTCCCCT 119861357 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| ||||||||||||||||| || || || || ||| Sbjct 119861356 GACGAGCGCCACTTCATCTCCCACGTCCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTG 119861297 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | ||| ||| || || ||| | ||||||||||| | Sbjct 119861296 CTCGAGAACCTCGCGTCGCGCTTCATGTCC---GACGTGCAGGTCGCCGAGGCCCGCGCC 119861240 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 119861239 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 119861181 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 119861180 CGAGACTTACATCCGCGACGGCGCCGAGAAGGACCGCCTTTTCCGCGCCATCGACACCGT 119861121 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || |||||||||| |||||| || | | ||||| Sbjct 119861120 CCCCGCCGTCCGCCGCAAGGCGGACTGGGCCATGCGGTGGATCGACGGCGGGGAGCGC-- 119861063 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 119861062 TTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 119861003 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 119861002 TGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 119860943 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || ||||| ||||||||||| || || || || ||| | ||||| | || Sbjct 119860942 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-GTGCCTCCTCTACGAGCTCC- 119860885 Query 60152 ATTGGAAAAATGCCCTTCCAAGGAT-----ATTCACAAGATTGT-TCAGTGGGCTTGTGA 60205 | | | | || || | | | | | | |||| || | | | | || || Sbjct 119860884 -TCCGCAGCAAGC---TCGACGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTG-GA 119860830 Query 60206 AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | ||| |||||||| || || ||||| || | ||| | || ||| ||| | Sbjct 119860829 CATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGC 119860770 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGC-CCAGTTTGGAG 60321 |||| ||||||| |||| ||||| |||||| |||||||| | || || | Sbjct 119860769 GCTCATGAGCGAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCACTAGGGTGCAA 119860710 Query 60322 AAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 | | || ||| || ||||| ||||||||||||||| ||||||| || | | Sbjct 119860709 CAAG----ATGTACAACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGG 119860654 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | |||||||||||||| |||||||| ||||| || || Sbjct 119860653 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 119860617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548385001598160