Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3 150 2e-31
seq2 134 2e-26
seq6469 91.5 2e-13
seq7 91.5 2e-13
seq6 91.5 2e-13
seq5 91.5 2e-13
seq1 87.8 2e-12
>seq3
Length=300915289
Score = 150 bits (166), Expect = 2e-31
Identities = 332/491 (68%), Gaps = 9/491 (2%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
|| || ||||| || || |||||||| | ||| |||||||| |||||||| || ||||
Sbjct 250095966 AGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 250096025
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGT 74923
|||||||| ||||| || || |||||||| ||||| | ||||| || | | | | ||
Sbjct 250096026 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCC--CCGCCGT 250096083
Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982
| ||||| | ||||| || || || || || || |||| || |||| ||
Sbjct 250096084 CGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGATGGTGTCGACGGCGC 250096143
Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042
||||||||| ||||||| || ||| || | | | || | || || ||||||
Sbjct 250096144 GGAAGAGGCGGTCCTTCTCGGCGCCATCGCGGATGTACGTCTCGAGCAGCAGCGAGTACA 250096203
Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101
||||||| || || |||| || ||| |||| | ||||||| | |||||||| ||
Sbjct 250096204 TCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCG 250096262
Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161
| ||| || || || | ||| ||||| | ||||||||||| ||||||
Sbjct 250096263 ACCTGGACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCG 250096322
Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCC 75218
||||| || || || || ||| ||||||||||| |||| | ||| ||||
Sbjct 250096323 GCGAAGAAGGCGAGCACGTGAGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGCCGCGTCC 250096382
Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCC 75278
|| | | ||| | | | |||| ||||||| |||||||||| | | | ||||
Sbjct 250096383 CAGTGGCGCGCGTCGGCGGAGAGGTCAACCTCCTCGGCCGTCCAGAAGGACGCCACCGCC 250096442
Query 75279 TTTTTGTACAA 75289
|| ||||| ||
Sbjct 250096443 TTCTTGTAGAA 250096453
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 42624737 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 42624678
Query 79684 TGAGCTACGAAAGCAA 79699
||||||||||||||||
Sbjct 42624677 TGAGCTACGAAAGCAA 42624662
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|| ||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 259674389 TGTTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 259674448
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 259674449 TGAGCTACGAAAGC 259674462
>seq2
Length=243061704
Score = 134 bits (148), Expect = 2e-26
Identities = 274/401 (68%), Gaps = 6/401 (1%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
||||| ||||| || || |||||||| | ||| |||||||| |||||||| || ||||
Sbjct 119860959 AGGCCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 119861018
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGT 74923
|||||||| ||||| || || || ||||| || || | ||||| || | | | | ||
Sbjct 119861019 AAGATGCCCTCGACGCAGGCGAACGCGACGAGTCGCTCGGCGAAGCGCTCC--CCGCCGT 119861076
Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982
| ||||| | ||||| || || || || ||| || ||||| || ||||| ||
Sbjct 119861077 CGATCCACCGCATGGCCCAGTCCGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGC 119861136
Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042
|||| |||| ||||||| || || || | | || | || || ||||||
Sbjct 119861137 GGAAAAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAAGTCTCGAGCAGCAGCGAGTACA 119861196
Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101
||||||| || || |||| || ||| |||| | ||||||| | || ||||| ||
Sbjct 119861197 TCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCG 119861255
Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161
| ||| || || || | ||| ||||| | ||||||||||| ||||||
Sbjct 119861256 ACCTGCACGTCGGACATGAAGCGCGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCG 119861315
Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202
||||| || ||||| || ||| ||||||||||| ||
Sbjct 119861316 GCGAAGAAGGCCAGGACGTGGGAGATGAAGTGGCGCTCGTC 119861356
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 8070888 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8070829
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 8070828 TGAGCTACGAAAGC 8070815
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 22975053 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22974994
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 22974993 TGAGCTACGAAAGC 22974980
>seq6469
Length=392025
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 188656 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 188597
Query 79684 TGAGCTACGAAAGCAAA 79700
|||||||||||||| ||
Sbjct 188596 TGAGCTACGAAAGCCAA 188580
>seq7
Length=154015841
Score = 91.5 bits (100), Expect = 2e-13
Identities = 69/79 (87%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678
|||| |||||||| |||| | || |||| ||||||||||||||||||||||||||| |
Sbjct 123315074 CAGA-TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 123315132
Query 79679 CCAATTGAGCTACGAAAGC 79697
|||| ||||||||||||||
Sbjct 123315133 CCAACTGAGCTACGAAAGC 123315151
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||| || |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 123314431 TGCTTACGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 123314490
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 123314491 TGAGCTACGAAAGC 123314504
>seq6
Length=240577051
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 217606304 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 217606245
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 217606244 TGAGCTACGAAAGCA 217606230
>seq5
Length=158699395
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 92508879 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 92508938
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 92508939 TGAGCTACGAAAGCA 92508953
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCT-CTACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||| | |||||
Sbjct 140442023 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCCAACCAAC 140442082
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 140442083 TGAGCTACGAAAGC 140442096
>seq1
Length=275477322
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| || || |||| ||||||||||||||||||||||||||| |||||
Sbjct 248781034 TGCTCTCGTTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 248780975
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||| ||||
Sbjct 248780974 TGAGCTACGAGAGCA 248780960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547076535162200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |