Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 150 2e-31 seq2 134 2e-26 seq6469 91.5 2e-13 seq7 91.5 2e-13 seq6 91.5 2e-13 seq5 91.5 2e-13 seq1 87.8 2e-12 >seq3 Length=300915289 Score = 150 bits (166), Expect = 2e-31 Identities = 332/491 (68%), Gaps = 9/491 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 250095966 AGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 250096025 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGT 74923 |||||||| ||||| || || |||||||| ||||| | ||||| || | | | | || Sbjct 250096026 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCC--CCGCCGT 250096083 Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 | ||||| | ||||| || || || || || || |||| || |||| || Sbjct 250096084 CGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGATGGTGTCGACGGCGC 250096143 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 ||||||||| ||||||| || ||| || | | | || | || || |||||| Sbjct 250096144 GGAAGAGGCGGTCCTTCTCGGCGCCATCGCGGATGTACGTCTCGAGCAGCAGCGAGTACA 250096203 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 ||||||| || || |||| || ||| |||| | ||||||| | |||||||| || Sbjct 250096204 TCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCG 250096262 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 | ||| || || || | ||| ||||| | ||||||||||| |||||| Sbjct 250096263 ACCTGGACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCG 250096322 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCC 75218 ||||| || || || || ||| ||||||||||| |||| | ||| |||| Sbjct 250096323 GCGAAGAAGGCGAGCACGTGAGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGCCGCGTCC 250096382 Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCC 75278 || | | ||| | | | |||| ||||||| |||||||||| | | | |||| Sbjct 250096383 CAGTGGCGCGCGTCGGCGGAGAGGTCAACCTCCTCGGCCGTCCAGAAGGACGCCACCGCC 250096442 Query 75279 TTTTTGTACAA 75289 || ||||| || Sbjct 250096443 TTCTTGTAGAA 250096453 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 42624737 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 42624678 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 42624677 TGAGCTACGAAAGCAA 42624662 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 || ||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 259674389 TGTTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 259674448 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 259674449 TGAGCTACGAAAGC 259674462 >seq2 Length=243061704 Score = 134 bits (148), Expect = 2e-26 Identities = 274/401 (68%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 119860959 AGGCCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 119861018 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGT 74923 |||||||| ||||| || || || ||||| || || | ||||| || | | | | || Sbjct 119861019 AAGATGCCCTCGACGCAGGCGAACGCGACGAGTCGCTCGGCGAAGCGCTCC--CCGCCGT 119861076 Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 | ||||| | ||||| || || || || ||| || ||||| || ||||| || Sbjct 119861077 CGATCCACCGCATGGCCCAGTCCGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGC 119861136 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 |||| |||| ||||||| || || || | | || | || || |||||| Sbjct 119861137 GGAAAAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAAGTCTCGAGCAGCAGCGAGTACA 119861196 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 ||||||| || || |||| || ||| |||| | ||||||| | || ||||| || Sbjct 119861197 TCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCG 119861255 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 | ||| || || || | ||| ||||| | ||||||||||| |||||| Sbjct 119861256 ACCTGCACGTCGGACATGAAGCGCGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCG 119861315 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 ||||| || ||||| || ||| ||||||||||| || Sbjct 119861316 GCGAAGAAGGCCAGGACGTGGGAGATGAAGTGGCGCTCGTC 119861356 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 8070888 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8070829 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 8070828 TGAGCTACGAAAGC 8070815 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 22975053 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22974994 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 22974993 TGAGCTACGAAAGC 22974980 >seq6469 Length=392025 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 188656 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 188597 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 188596 TGAGCTACGAAAGCCAA 188580 >seq7 Length=154015841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/79 (87%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 |||| |||||||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 123315074 CAGA-TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 123315132 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| |||||||||||||| Sbjct 123315133 CCAACTGAGCTACGAAAGC 123315151 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||| || |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 123314431 TGCTTACGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 123314490 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 123314491 TGAGCTACGAAAGC 123314504 >seq6 Length=240577051 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 217606304 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 217606245 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 217606244 TGAGCTACGAAAGCA 217606230 >seq5 Length=158699395 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 92508879 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 92508938 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 92508939 TGAGCTACGAAAGCA 92508953 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCT-CTACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||| | ||||| Sbjct 140442023 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCCAACCAAC 140442082 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 140442083 TGAGCTACGAAAGC 140442096 >seq1 Length=275477322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 248781034 TGCTCTCGTTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 248780975 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 248780974 TGAGCTACGAGAGCA 248780960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547076535162200