Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7 105 6e-18 seq2 102 7e-17 >seq7 Length=154015841 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| |||||||| ||||| |||| || ||||||||||| || || || | Sbjct 4014014 ACTTGAGCAATCATGTATGTGAGAAGAGAATACGATGCAATGTTGAATGGAACACCAAGT 4014073 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||| | || |||||||| | ||||||||| |||||||||||| | ||||| || Sbjct 4014074 CCCATGTCTGCAGAGCGTTGATACATCTGGCAGGATAGCTCCCCATTCTCAACGTAAAAC 4014133 Query 6737 TGGCAG 6742 ||| || Sbjct 4014134 TGGAAG 4014139 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| || ||||| | |||||||||||| ||||||||| | |||||||| || | ||| Sbjct 4014139 CTTCCAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGA 4014080 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 |||||| | || || || ||||||||||| || |||| ||||| |||||||| || Sbjct 4014079 CATGGGACTTGGTGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGC 4014020 Query 34723 TCATGT 34728 ||| || Sbjct 4014019 TCAAGT 4014014 >seq2 Length=243061704 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| ||||| || ||||| |||| || ||||||||||| || || || | Sbjct 49652898 ACTTGAGCAATCATATATGTGAGAAGAGAATACGATGCAATGTTGAATGGAACACCAAGT 49652957 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||| | || |||||||| | ||||||||| |||||||||||| | ||||| || Sbjct 49652958 CCCATGTCTGCAGAGCGTTGATACATCTGGCAGGATAGCTCCCCATTCTCAACGTAAAAC 49653017 Query 6737 TGGCAG 6742 ||| || Sbjct 49653018 TGGAAG 49653023 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| || ||||| | |||||||||||| ||||||||| | |||||||| || | ||| Sbjct 49653023 CTTCCAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGA 49652964 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 |||||| | || || || ||||||||||| || |||| ||||| || ||||| || Sbjct 49652963 CATGGGACTTGGTGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATATATGATTGC 49652904 Query 34723 TCATGT 34728 ||| || Sbjct 49652903 TCAAGT 49652898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448148154724080