Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5 122 6e-23 seq7 111 1e-19 seq4 102 6e-17 seq6 91.5 1e-13 seq3 86.0 4e-12 seq4399 82.4 5e-11 seq2 82.4 5e-11 >seq5 Length=158699395 Score = 122 bits (134), Expect = 6e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || |||||||| ||| | Sbjct 71677387 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACCCTTGAAGTTGAGTCCTCT 71677328 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||| | || ||||| ||||| | || || || || Sbjct 71677327 GACACGATTGACAATGTCAAAGCAAAGA-TTCAGGACAAGGAAGGGATCCCTCCGGACCA 71677269 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || || || || || || | ||||| || | || ||||| Sbjct 71677268 GCAGCGGTTGATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAA 71677209 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || ||||||||||| |||| Sbjct 71677208 CATTCAGAAAGAGTCCACCCTACA 71677185 Score = 122 bits (134), Expect = 6e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || |||||||| ||| | Sbjct 71682220 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACCCTTGAAGTTGAGTCCTCT 71682161 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||| | || ||||| ||||| | || || || || Sbjct 71682160 GACACGATTGACAATGTCAAAGCAAAGA-TTCAGGACAAGGAAGGGATCCCTCCGGACCA 71682102 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || || || || || || | ||||| || | || ||||| Sbjct 71682101 GCAGCGGTTGATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAA 71682042 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || ||||||||||| |||| Sbjct 71682041 CATTCAGAAAGAGTCCACCCTACA 71682018 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || ||||| || ||||| || || ||||| || | Sbjct 71677159 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACGCTGGAGGTTGAGTCTTCA 71677100 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | || |||||||| Sbjct 71677099 GACACAATCGACAATGTGAAGGCGAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGATCA 71677041 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || || | ||||| |||| |||||||| Sbjct 71677040 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCTTAGCTGATTACAA 71676981 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 71676980 CATTCAGAAAGAGTCTAC 71676963 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || ||||| || ||||| || |||||||| || | Sbjct 71681764 ATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACCATCACACTTGAAGTTGAGTCTTCT 71681705 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||| | || ||||||||||| | || ||||| || Sbjct 71681704 GACACAATTGATAATGTGAAAGCAAAGA-TTCAAGACAAAGAAGGCATCCCACCAGACCA 71681646 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || || ||||| || | || ||| | | || || || Sbjct 71681645 GCAGCGCCTCATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGGACTCTTGCTGACTATAA 71681586 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 71681585 CATTCAGAAGGAGTCCAC 71681568 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||| | || ||||| || ||||| || || ||||| || | Sbjct 71681992 ATGCAGATTTTTGTGAAGACCTTGACTGGAAAGACCATCACGCTGGAGGTTGAGTCTTCA 71681933 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| || || | || |||||||| Sbjct 71681932 GACACAATCGACAATGTGAAGGC-GAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCA 71681874 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || || | ||||| |||| || ||||| Sbjct 71681873 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCTTAGCTGACTACAA 71681814 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 71681813 CATTCAGAAAGAGTCTAC 71681796 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || || || ||||| || || ||| | Sbjct 81635742 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTGGAGTCCTCC 81635801 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 81635802 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 81635861 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || ||||| || | ||||| | | || |||||| Sbjct 81635862 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 81635921 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 81635922 ATCCAGAAGGAGTCCAC 81635938 >seq7 Length=154015841 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || |||||||| || || || ||| || Sbjct 60356626 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACTCTGGAGGTGGAGTCCTCG 60356567 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 60356566 GACACAATTGACAATGTGAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCTCCAGACCA 60356508 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || |||| || | ||||| | | |||||||| Sbjct 60356507 GCAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCCTTGCTGATTACAA 60356448 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 60356447 CATCCAAAAGGAGTCCAC 60356430 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| ||||| || |||||||| ||||| || || | Sbjct 36806534 AAAATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTGGAGAGC 36806593 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || || || ||| || || || || | ||||| || Sbjct 36806594 AGCGACACCATCGACAATGTCAAGAC-TAAGATTCAGGATAAGGAGGGCATCCCGCCGGA 36806652 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || || || ||||| || ||||| |||| ||||| | | ||| || Sbjct 36806653 CCAGCAGTGCCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTA 36806712 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || |||||||| || Sbjct 36806713 CAACATCCAGAAAGAGTCGAC 36806733 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || || || || || || || ||| | Sbjct 60356398 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTGGAGTCCTCA 60356339 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| ||||| || || | || || || || Sbjct 60356338 GACACAATTGACAATGTCAAGGC-GAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 60356280 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || ||||| || | ||||| | | || ||||| Sbjct 60356279 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAA 60356220 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 60356219 CATCCAGAAGGAGTCTAC 60356202 >seq4 Length=191835039 Score = 102 bits (112), Expect = 6e-17 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| |||| || || || || Sbjct 68257409 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATCACCCTCGTGGTGGAGTCATCG 68257468 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | || || || ||| ||||| |||||| | | ||| | || Sbjct 68257469 GACACTATTGACA-ATGCCAAGGCAAGATTCAGGACAATGAAGGTATTCATCCAAACCAG 68257527 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || || ||||||| | ||||||||| Sbjct 68257528 CAGCGACTTATCTTTGCCGGCAAGCAGCTTGAGGATAGTTGCACTTTTGCTGATTACAAC 68257587 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || ||||| ||||| || || Sbjct 68257588 ATTCAGAAAGAATCCACTTTGCA 68257610 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| | || || || ||| | Sbjct 68254233 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCT 68254292 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||| || || | || ||||| || Sbjct 68254293 GACACCATCGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGACCA 68254351 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || ||||| || | || ||| | | || || || Sbjct 68254352 GCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGGCGTACTCTGGCTGACTATAA 68254411 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||||||| | ||| | || | | ||||| ||||| Sbjct 68254412 TATCCAGAAAGAGTCCACACTCCATCTTGTCCTCCGTTTGCGTGGAGG 68254459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || ||||| || || || |||||| | || || || || | Sbjct 68254688 AATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTTTGGAGGTGGAGTCTTC 68254747 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || ||| ||||| || || | || || || | Sbjct 68254748 AGACACGATTGACAATGTGAAGGC-GAAGATTCAGGACAAGGAGGGCATCCCCCCGGACC 68254806 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| | || ||||||||||| || ||||| || | || || | | ||||||| Sbjct 68254807 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGGACCCTGGCAGATTACA 68254866 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || ||||| Sbjct 68254867 ACATTCAGAAGGAATCCAC 68254885 >seq6 Length=240577051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||||||||| || || ||||| || || ||||| ||| | Sbjct 194678808 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCT 194678867 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 194678868 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 194678927 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || || || || | |||||| | | || |||||| Sbjct 194678928 CAGCGCCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGGCGGACTACAAC 194678987 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || |||||||| | || | || | ||| || |||| ||| Sbjct 194678988 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTGAGAGGTGGA 194679035 >seq3 Length=300915289 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| || || || | | | Sbjct 25198109 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGAAGAGCTCT 25198168 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || || ||||| || || | || ||||||||| Sbjct 25198169 GACACCATTGATAATGTAAAAGCCAAGATCCAGGACAAGGAGGGGATTCCTCCAGATCAA 25198228 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || ||||| |||| || || || | ||||||||| Sbjct 25198229 CAGAGGCTCATCTTTGCTGGGAAGCAGCTGGAGGACGGTCGTACATTGGCAGATTACAAC 25198288 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || ||||| | ||| | ||||| Sbjct 25198289 ATCCAGAAGGAATCCACTCTCCATCTTGTTTT 25198320 >seq4399 Length=1515107 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || |||||||||||| | ||||| |||||||| || ||||| Sbjct 1364485 GACAAGGAAGGGATTCCTCCGGATCAACAGCGTCTGATATTCGCCGGCAAGCAGCTGGAG 1364544 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | |||||| | | || |||||||| || || ||||| || | || || ||| | Sbjct 1364545 GATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGTTCTC 1364604 Query 23824 AGG 23826 ||| Sbjct 1364605 AGG 1364607 >seq2 Length=243061704 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23598 TTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGA 23657 ||||| ||| | ||||||||||| || || |||||||| || || || ||||| ||||| Sbjct 233056555 TTAATGACTGCAGATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGA 233056614 Query 23658 AGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 ||||| ||| | ||||| | || | | || || || ||||| || || | Sbjct 233056615 GGTTGAGTCCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCAT 233056674 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || || ||| | | || || || ||||| || || || |||| || || | Sbjct 233056675 CCCCCCGGACCAGCAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACGCT 233056734 Query 23778 AGGCGATTACAACATACAAAAAGAG 23802 | ||||||||||| || || ||| Sbjct 233056735 CGCTGATTACAACATCCAGAAGGAG 233056759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337925607677612