Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8759 96.9 5e-15 seq2 84.2 3e-11 >seq8759 Length=1216561 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| | || | ||||| |||| |||||| Sbjct 958508 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATACCA 958449 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||| |||||||||||| ||| ||||| ||| | || ||||| || || || Sbjct 958448 TTTGATGCTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATGTTGTGAACCGAG 958389 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| || |||||||| Sbjct 958388 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCGTAGATT 958329 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 958328 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 958288 >seq2 Length=243061704 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 78201 AACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260 ||||| |||| ||| || || ||||||||||||||||| ||| ||||| ||| | || Sbjct 87114699 AACATAGGAACAATTCCATTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCA 87114758 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 |||||||| || || | || |||||||| || || || | ||| || Sbjct 87114759 CGAATATTGTGAACTGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCC 87114818 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 |||| ||||| || || ||||| || |||||||| ||||| | || |||||||| Sbjct 87114819 TTCAGAGTATCATAAATTCCCTCAATGCTGTCATCTTTCATGCAGATGAGGAAACAGCT 87114877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694491754972960