Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq8759 87.8 3e-12
seq2 87.8 3e-12
>seq8759
Length=1216561
Score = 87.8 bits (96), Expect = 3e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|| || ||||| | ||| | ||||| | ||| | || | ||||| |||| ||| ||
Sbjct 958508 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATACCA 958449
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|| |||| ||||||||||| ||| ||||| ||| |||||||| || || ||
Sbjct 958448 TTTGATGCTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATGTTGTGAACCGAG 958389
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || |||||||| || ||| || | |||||| |||| || || |||||
Sbjct 958388 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCGTAGATT 958329
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974
||||| || || ||||| ||||| | ||| ||||||||
Sbjct 958328 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 958288
>seq2
Length=243061704
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|||||||||||||| | | || || ||||| ||||| ||||| |||| |||| ||
Sbjct 87114001 CTCTCTTTCATATTTTTTGTACAAATTCTCAAACTCATCACCCCAGCAATCAGCCAACCC 87114060
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611
||| |||||| || || | ||||||||| || || | | || |||| || ||| ||
Sbjct 87114061 TGGAGCTTCATTAGGGCAAAACAATGACCATTCTCCGTTATTCTGGACCCTTTGCATGAA 87114120
Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATC 76644
|||||||| | ||||| ||| || |||||
Sbjct 87114121 TAGATCAGGAACCCATAATGCATAGAAAAGATC 87114153
Score = 87.8 bits (96), Expect = 3e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|| || ||||| | ||| | ||||| | || | || | ||||| |||| ||| ||
Sbjct 87114657 CCACCTTGATCAACATAACGAGCAGTATCGTTGAATACACGTAACATAGGAACAATTCCA 87114716
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|| ||||| ||||||||||| ||| ||||| ||| ||||||||||| || ||
Sbjct 87114717 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGAG 87114776
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || |||||||| || ||| || | |||||| |||| || ||||| ||
Sbjct 87114777 ACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCCTTCAGAGTATCATAAATT 87114836
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974
||||| || || ||||| ||||| | || ||||||||
Sbjct 87114837 CCCTCAATGCTGTCATCTTTCATGCAGATGAGGAAACAGCT 87114877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712752699756480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |