Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8759 87.8 3e-12 seq2 87.8 3e-12 >seq8759 Length=1216561 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 958508 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATACCA 958449 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || |||| ||||||||||| ||| ||||| ||| |||||||| || || || Sbjct 958448 TTTGATGCTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATGTTGTGAACCGAG 958389 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| |||| || || ||||| Sbjct 958388 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCGTAGATT 958329 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 958328 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 958288 >seq2 Length=243061704 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||||| | | || || ||||| ||||| ||||| |||| |||| || Sbjct 87114001 CTCTCTTTCATATTTTTTGTACAAATTCTCAAACTCATCACCCCAGCAATCAGCCAACCC 87114060 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| || || | ||||||||| || || | | || |||| || ||| || Sbjct 87114061 TGGAGCTTCATTAGGGCAAAACAATGACCATTCTCCGTTATTCTGGACCCTTTGCATGAA 87114120 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||||||| | ||||| ||| || ||||| Sbjct 87114121 TAGATCAGGAACCCATAATGCATAGAAAAGATC 87114153 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | || | || | ||||| |||| ||| || Sbjct 87114657 CCACCTTGATCAACATAACGAGCAGTATCGTTGAATACACGTAACATAGGAACAATTCCA 87114716 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| ||| ||||| ||| ||||||||||| || || Sbjct 87114717 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGAG 87114776 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 87114777 ACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCCTTCAGAGTATCATAAATT 87114836 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | || |||||||| Sbjct 87114837 CCCTCAATGCTGTCATCTTTCATGCAGATGAGGAAACAGCT 87114877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712752699756480