Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 104 2e-17
>seq55201
Length=1221137
Score = 104 bits (114), Expect = 2e-17
Identities = 392/600 (65%), Gaps = 15/600 (3%)
Strand=Plus/Minus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-CGTA 16856
||| || ||||| || ||||| ||| ||||| ||| ||||||||| | |||| || |
Sbjct 301608 ATCAGCGACAAACTCAATATAGCGGCTCATTAGATCGGCGTTCATTCCCACAAGAGCGCA 301549
Query 16857 CCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CT 16914
||||| || || | ||| || | ||| ||| | || || ||| || ||| ||
Sbjct 301548 T-GGAAGTGCATCGCAAACAAACTCCCT-CTCAATATCCACAGCATCCGCAACAATCTCT 301491
Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGCGAAA 16972
| ||| | ||||| || | | |||| | ||| | || | | || || || ||
Sbjct 301490 CG-AACCCTCTCCTCTGAAA-TCT-TGTTGATCAGAAGACTATATAAAAGGCAGGCAAAG 301434
Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032
|||||||| | ||||| || | || || ||||| || ||||| | |||||||||
Sbjct 301433 TCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATC 301374
Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092
|| || ||||| | ||| || || ||| ||| ||||| ||||| ||||| ||
Sbjct 301373 AAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCA 301314
Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152
||| | || || |||| | || || || | || | || | ||||| |
Sbjct 301313 ACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA---ATCCAGCGC 301257
Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212
|| |||||| || || | | ||| || || || ||||| ||| |
Sbjct 301256 AGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGAAAAAGGAGG 301197
Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272
|||||||| | ||| | || || || |||| ||| || || ||||||||||||||
Sbjct 301196 GATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATTTCGGAGTGA 301137
Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC- 17331
||||| || ||||| |||||||| ||||| || || || |||| | |||||||||
Sbjct 301136 ATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGTTGAACTTCG 301077
Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
| | | |||||| | ||||| || || ||||| || || ||||| || || ||
Sbjct 301076 CGCAT-GAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGCAAAGAAGGC 301018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517073973633360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |