Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq55201 104 2e-17 >seq55201 Length=1221137 Score = 104 bits (114), Expect = 2e-17 Identities = 392/600 (65%), Gaps = 15/600 (3%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-CGTA 16856 ||| || ||||| || ||||| ||| ||||| ||| ||||||||| | |||| || | Sbjct 301608 ATCAGCGACAAACTCAATATAGCGGCTCATTAGATCGGCGTTCATTCCCACAAGAGCGCA 301549 Query 16857 CCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CT 16914 ||||| || || | ||| || | ||| ||| | || || ||| || ||| || Sbjct 301548 T-GGAAGTGCATCGCAAACAAACTCCCT-CTCAATATCCACAGCATCCGCAACAATCTCT 301491 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGCGAAA 16972 | ||| | ||||| || | | |||| | ||| | || | | || || || || Sbjct 301490 CG-AACCCTCTCCTCTGAAA-TCT-TGTTGATCAGAAGACTATATAAAAGGCAGGCAAAG 301434 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 |||||||| | ||||| || | || || ||||| || ||||| | ||||||||| Sbjct 301433 TCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATC 301374 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || || ||||| | ||| || || ||| ||| ||||| ||||| ||||| || Sbjct 301373 AAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCA 301314 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 ||| | || || |||| | || || || | || | || | ||||| | Sbjct 301313 ACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA---ATCCAGCGC 301257 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 || |||||| || || | | ||| || || || ||||| ||| | Sbjct 301256 AGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGAAAAAGGAGG 301197 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 |||||||| | ||| | || || || |||| ||| || || |||||||||||||| Sbjct 301196 GATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATTTCGGAGTGA 301137 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC- 17331 ||||| || ||||| |||||||| ||||| || || || |||| | ||||||||| Sbjct 301136 ATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGTTGAACTTCG 301077 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | | | |||||| | ||||| || || ||||| || || ||||| || || || Sbjct 301076 CGCAT-GAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGCAAAGAAGGC 301018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517073973633360