Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq25504 93.3 4e-14 >seq25504 Length=639989 Score = 93.3 bits (102), Expect = 4e-14 Identities = 194/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 |||||||| || ||||| ||||| || ||||| |||||||||||||||||| |||||| Sbjct 367679 CTGTACATCTCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCC 367738 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 |||| | ||||| ||| || || | || |||||||| ||||| || ||| Sbjct 367739 TCCGGGAGCTGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCA 367798 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGT-AAGAAT 16671 ||||||||| || || | | ||| | | ||| | |||||||| || | | || Sbjct 367799 GATGCAGCAAAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGAT 367858 Query 16672 --ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 || ||| | | |||| ||| | || ||||| |||| ||||| ||| || Sbjct 367859 TGATCCCAGTGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCT 367918 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | || || || ||||| | ||| || | | || |||| ||||| Sbjct 367919 TCGGCTTTCTTGTACATCTCCCAGATCTGAGGATAGCGTATCGGAAA 367965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510948360842640