Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 127 2e-24
seq2987 102 1e-16
seq40021 96.9 4e-15
>seq55201
Length=1221137
Score = 127 bits (140), Expect = 2e-24
Identities = 380/582 (65%), Gaps = 11/582 (2%)
Strand=Plus/Minus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || || ||||| || |||||||| || | | || | |||||||| || |||||
Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253
|||||||| | || ||||| || ||||| || |||| |||| | | | ||||| |||||
Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCAGAGAAGAA 301324
Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATG 24310
||| ||||| || || || || | || | || || | | | | | ||||
Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA-- 301266
Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370
||||| | ||||| | ||||| || || || || ||||| || |||
Sbjct 301265 -ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACG 301207
Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430
||| || | |||||| || ||||| | || || || | | ||||||||||||
Sbjct 301206 AAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACAT 301147
Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490
||| || ||||||||||||||||| || ||||| |||||||| | |||||| | |
Sbjct 301146 TTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAG 301087
Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550
|| ||||| ||||| | |||| || ||| || || || || || ||
Sbjct 301086 TTGAACTTCGCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGC 301027
Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 24607
||| || || | || || | | || | ||||| | || ||| | || |||
Sbjct 301026 AAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCA 300967
Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667
| | | |||| || | || || |||||| | ||||| || || |||||||| ||
Sbjct 300966 GTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTT 300907
Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709
|| ||||| | |||||| | |||| | || ||||| ||
Sbjct 300906 CTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACAT 300865
>seq2987
Length=13944
Score = 102 bits (112), Expect = 1e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|| || ||||| | || | ||| || | |||| | |||| |||||| |||| |||||||
Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
|| |||| ||||| || || ||| || |||||| ||||||||||||| || |||
Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| ||| || || || || || || | ||| || ||||| |||||||| ||
Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861
Query 54365 CCCTCTATACTATCATCCATCATG 54388
|| || || |||||||| |||||
Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483
||| || ||||| || | |||||| || || || ||||||||| | ||| | | |||
Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055
Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543
|| || | || || || || ||||| || || || || || | || | ||| ||
Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115
Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603
|||||||||||||||||| || | ||| | ||||| | ||||||| | || |
Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175
Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
||||||||||||||||| | || ||| || || || || |||||
Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223
Score = 82.4 bits (90), Expect = 9e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 54000
|||||| | |||| || ||||||||| || |||| ||| || |||| || ||
Sbjct 517 ATACAAGTTTACAAAATCATCTCCCCAACAATCAGCCAAACCAAGAGCCTCATTAGGGCA 576
Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060
| || ||||||||| | | | || || | || ||| || |||||||||||||||||
Sbjct 577 AAATAATGACCACTCTTCATTACTCTGGACCCTTTCCATGAAAAGATCAGGAATCCAAAG 636
Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093
|| ||| |||||||||| ||||| |||||
Sbjct 637 GGCATAAAAAAGATCTCTGGCCCTATGCTCCTC 669
>seq40021
Length=871558
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483
||| |||||||| || |||||||||||||| || |||||||| | || | ||||
Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857
Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543
|| || | ||| || || || ||||| || |||||| |||| || || | ||| |
Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797
Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603
||| ||||| || ||||| || | || || ||| || | ||||| | || |
Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTTAGAAGATAGGACCTCTCGAG 117737
Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct 117736 AGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593180556348960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |