Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq55201 127 2e-24 seq2987 102 1e-16 seq40021 96.9 4e-15 >seq55201 Length=1221137 Score = 127 bits (140), Expect = 2e-24 Identities = 380/582 (65%), Gaps = 11/582 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||||| || |||||||| || | | || | |||||||| || ||||| Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| | || ||||| || ||||| || |||| |||| | | | ||||| ||||| Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCAGAGAAGAA 301324 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATG 24310 ||| ||||| || || || || | || | || || | | | | | |||| Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA-- 301266 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | ||||| || || || || ||||| || ||| Sbjct 301265 -ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACG 301207 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||| || | |||||| || ||||| | || || || | | |||||||||||| Sbjct 301206 AAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACAT 301147 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 ||| || ||||||||||||||||| || ||||| |||||||| | |||||| | | Sbjct 301146 TTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAG 301087 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 || ||||| ||||| | |||| || ||| || || || || || || Sbjct 301086 TTGAACTTCGCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGC 301027 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 24607 ||| || || | || || | | || | ||||| | || ||| | || ||| Sbjct 301026 AAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCA 300967 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | | | |||| || | || || |||||| | ||||| || || |||||||| || Sbjct 300966 GTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTT 300907 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || ||||| | |||||| | |||| | || ||||| || Sbjct 300906 CTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACAT 300865 >seq2987 Length=13944 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||| | || | ||| || | |||| | |||| |||||| |||| ||||||| Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| || || ||| || |||||| ||||||||||||| || ||| Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || || || | ||| || ||||| |||||||| || Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861 Query 54365 CCCTCTATACTATCATCCATCATG 54388 || || || |||||||| ||||| Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | |||||| || || || ||||||||| | ||| | | ||| Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | || || || || ||||| || || || || || | || | ||| || Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||||||||| || | ||| | ||||| | ||||||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||||||||||| | || ||| || || || || ||||| Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 54000 |||||| | |||| || ||||||||| || |||| ||| || |||| || || Sbjct 517 ATACAAGTTTACAAAATCATCTCCCCAACAATCAGCCAAACCAAGAGCCTCATTAGGGCA 576 Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 | || ||||||||| | | | || || | || ||| || ||||||||||||||||| Sbjct 577 AAATAATGACCACTCTTCATTACTCTGGACCCTTTCCATGAAAAGATCAGGAATCCAAAG 636 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 || ||| |||||||||| ||||| ||||| Sbjct 637 GGCATAAAAAAGATCTCTGGCCCTATGCTCCTC 669 >seq40021 Length=871558 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| |||||||| || |||||||||||||| || |||||||| | || | |||| Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | ||| || || || ||||| || |||||| |||| || || | ||| | Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||| ||||| || ||||| || | || || ||| || | ||||| | || | Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTTAGAAGATAGGACCTCTCGAG 117737 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||| ||||| || | || |||||||| || ||||| || Sbjct 117736 AGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593180556348960