Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq41242 95.1 2e-14
seq40947 91.5 2e-13
seq38797 89.7 8e-13
seq14985 87.8 3e-12
>seq41242
Length=195047
Score = 95.1 bits (104), Expect = 2e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | ||||| || || || || || || ||| | || | || |||
Sbjct 146895 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 146836
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | || || || || || ||||| || || || || |||||
Sbjct 146835 -GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 146777
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| ||||| |||||||| | |||||| | || || | | ||| || ||
Sbjct 146776 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 146717
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
||||||||| ||||| || | || | || | ||| | || ||||||
Sbjct 146716 TATTCAAAAGGAATCTACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGT 146668
Score = 95.1 bits (104), Expect = 2e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | ||||| || || || || || || ||| | || | || |||
Sbjct 152059 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 152000
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | || || || || || ||||| || || || || |||||
Sbjct 151999 -GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 151941
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| ||||| |||||||| | |||||| | || || | | ||| || ||
Sbjct 151940 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 151881
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
||||||||| ||||| || | || | || | ||| | || ||||||
Sbjct 151880 TATTCAAAAGGAATCTACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGT 151832
Score = 89.7 bits (98), Expect = 8e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||||||| | ||||| || || || || || || || |||| | || |||
Sbjct 171159 ATGCAAATATTTGTGAAGACGCTTACTGGAAAGACCATCACCTTAGAAGTAGAGAGC-TC 171101
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || |||| | || || || || || || || || || || || |||||
Sbjct 171100 GGACACCATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATCCCGCCAGATCA 171041
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||||| || || || |||||||| | |||||| |||| || | | |||||| ||
Sbjct 171040 GCAGAGGCTAATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCCTTGCAGATTACAA 170981
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
|||||| || ||||| || | ||| | || | ||| | || |||||
Sbjct 170980 TATTCAGAAGGAATCCACCCTCCATCTTGTACTCCGTCTCCGTGGTGG 170933
>seq40947
Length=4604
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
|||||| || ||| | ||||| || || || ||||| || || | || | || |||
Sbjct 1680 AATGCAGATTTTTGTTAAGACTCTTACTGGTAAAACGATCACCCTGGACGTGGAGAGCTC 1739
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||||||||| ||| | || ||| ||||||||||| || || || || || ||||
Sbjct 1740 G-GATACAATTGAGAATGTGAAGTCGAAGATTCAAGATAAGGAGGGGATTCCGCCGGATC 1798
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| |||||||| || ||||| || || || | ||||| | || || | | || || |
Sbjct 1799 AGCAAAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACGCTTGCGGACTACA 1858
Query 124717 ATATTCAAAAAGAATCAAC 124735
|||| || |||||||||||
Sbjct 1859 ATATACAGAAAGAATCAAC 1877
>seq38797
Length=1288649
Score = 89.7 bits (98), Expect = 8e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||||||| | ||||| || || || |||||||| || | ||| | || |||
Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| |||||| || |||| || || || || || || || || ||||| || ||
Sbjct 629507 -GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCA 629565
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||||||||| ||||| || ||||| | ||||| | || || | | || |||||
Sbjct 629566 GCAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAA 629625
Query 124718 TATTCAAAAAGAATCAAC 124735
||||| ||||| || ||
Sbjct 629626 CATTCAGAAAGAGTCCAC 629643
>seq14985
Length=335608
Score = 87.8 bits (96), Expect = 3e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 124628 TCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATT 124687
||| || || || || || ||||||||||||||| | | |||||||| || || || ||
Sbjct 170260 TCAGGACAAGGAGGGCATTCCACCTGATCAACAACGATTGATTTTTGCCGGGAAGCAGTT 170201
Query 124688 AGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747
|| ||| |||| || |||| ||||| || ||||| || || ||||| | ||| ||||
Sbjct 170200 GGAAGATGGTCGGACCTTAGCGGATTACAACATTCAGAAGGAGTCAACCCTCCATCTGGT 170141
Query 124748 TTT 124750
|||
Sbjct 170140 TTT 170138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754767571833600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |