Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq41242 95.1 2e-14 seq40947 91.5 2e-13 seq38797 89.7 8e-13 seq14985 87.8 3e-12 >seq41242 Length=195047 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | || | || ||| Sbjct 146895 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 146836 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || || || || || ||||| || || || || ||||| Sbjct 146835 -GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 146777 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| |||||||| | |||||| | || || | | ||| || || Sbjct 146776 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 146717 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||||| ||||| || | || | || | ||| | || |||||| Sbjct 146716 TATTCAAAAGGAATCTACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGT 146668 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | || | || ||| Sbjct 152059 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 152000 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || || || || || ||||| || || || || ||||| Sbjct 151999 -GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 151941 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| |||||||| | |||||| | || || | | ||| || || Sbjct 151940 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 151881 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||||| ||||| || | || | || | ||| | || |||||| Sbjct 151880 TATTCAAAAGGAATCTACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGT 151832 Score = 89.7 bits (98), Expect = 8e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || || || || || |||| | || ||| Sbjct 171159 ATGCAAATATTTGTGAAGACGCTTACTGGAAAGACCATCACCTTAGAAGTAGAGAGC-TC 171101 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || || || || || || || || || || || ||||| Sbjct 171100 GGACACCATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATCCCGCCAGATCA 171041 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || |||||||| | |||||| |||| || | | |||||| || Sbjct 171040 GCAGAGGCTAATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCCTTGCAGATTACAA 170981 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||| || ||||| || | ||| | || | ||| | || ||||| Sbjct 170980 TATTCAGAAGGAATCCACCCTCCATCTTGTACTCCGTCTCCGTGGTGG 170933 >seq40947 Length=4604 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| || || || ||||| || || | || | || ||| Sbjct 1680 AATGCAGATTTTTGTTAAGACTCTTACTGGTAAAACGATCACCCTGGACGTGGAGAGCTC 1739 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| ||| | || ||| ||||||||||| || || || || || |||| Sbjct 1740 G-GATACAATTGAGAATGTGAAGTCGAAGATTCAAGATAAGGAGGGGATTCCGCCGGATC 1798 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||||| || ||||| || || || | ||||| | || || | | || || | Sbjct 1799 AGCAAAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACGCTTGCGGACTACA 1858 Query 124717 ATATTCAAAAAGAATCAAC 124735 |||| || ||||||||||| Sbjct 1859 ATATACAGAAAGAATCAAC 1877 >seq38797 Length=1288649 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || |||||||| || | ||| | || ||| Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || |||| || || || || || || || || ||||| || || Sbjct 629507 -GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCA 629565 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || ||||| | ||||| | || || | | || ||||| Sbjct 629566 GCAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAA 629625 Query 124718 TATTCAAAAAGAATCAAC 124735 ||||| ||||| || || Sbjct 629626 CATTCAGAAAGAGTCCAC 629643 >seq14985 Length=335608 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 124628 TCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| || || || || || ||||||||||||||| | | |||||||| || || || || Sbjct 170260 TCAGGACAAGGAGGGCATTCCACCTGATCAACAACGATTGATTTTTGCCGGGAAGCAGTT 170201 Query 124688 AGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||| |||| || |||| ||||| || ||||| || || ||||| | ||| |||| Sbjct 170200 GGAAGATGGTCGGACCTTAGCGGATTACAACATTCAGAAGGAGTCAACCCTCCATCTGGT 170141 Query 124748 TTT 124750 ||| Sbjct 170140 TTT 170138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754767571833600