Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq15016 105 8e-18
seq41242 104 3e-17
seq25488 98.7 1e-15
seq19607 96.9 4e-15
seq38797 95.1 1e-14
seq40947 86.0 7e-12
>seq15016
Length=583550
Score = 105 bits (116), Expect = 8e-18
Identities = 146/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || ||||||||||| || || || || |||| || |||||||| || |||||
Sbjct 437720 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 437661
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | ||||| || || | ||| | || |||||| ||| || |||||| | | |||
Sbjct 437660 ATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCC-TGGATTTTTGCCTTAACGTT 437602
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || || || ||||| |||| ||||| || || |||||||| || || ||
Sbjct 437601 GTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGAC 437542
Query 43172 AAAGATTTGCATTTTTACGCCG 43193
||||| ||||| ||| || ||
Sbjct 437541 GAAGATCTGCATCTTTCCGTCG 437520
>seq41242
Length=195047
Score = 104 bits (114), Expect = 3e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| |||||||||||||| || || || || | || || ||||| || ||||||||
Sbjct 170969 TCCTTCTGAATATTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAG 171028
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || | |||||| || | ||| | | |||||||||| ||| ||| |||| |
Sbjct 171029 ATTAGCCTCTGCTGATCTGGCGGGATCCCCTCCTTGTCCTGGATCTTTGCCTTGACATTA 171088
Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | ||||| |||| || || || | |||||||| || || || ||||||||
Sbjct 171089 TCGATGGTGTCCGAGCTC---TCTACTTCTAAGGTGATGGTCTTTCCAGTAAGCGTCTTC 171145
Query 43170 ACAAAGATTTGCAT 43183
||||| ||||||||
Sbjct 171146 ACAAATATTTGCAT 171159
Score = 104 bits (114), Expect = 3e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||||||||| ||||| || ||||| || || |||| || |||||||| || || |||
Sbjct 171197 TCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAAT 171256
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | | |||||||||| || | || |||||||||| |||||| || | |
Sbjct 171257 ATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTG 171316
Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | || || |||| ||||| || | ||||||||||| || || || |||||
Sbjct 171317 TCAATGGTATCAGAGCTC---TCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTG 171373
Query 43170 ACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 171374 ACAAAGATCTGCAT 171387
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||||||||||||||| || || ||||| || | || || ||||| || ||||| ||
Sbjct 146705 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 146764
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || | |||||| || | || | || ||| |||||| ||| ||| || | |
Sbjct 146765 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 146824
Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | || || |||| ||||| || | |||||||| || ||||| || |||||
Sbjct 146825 TCAATTGTATCGGAGCTC---TCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 146881
Query 43170 ACAAAGATTTGCAT 43183
||||| || |||||
Sbjct 146882 ACAAAAATCTGCAT 146895
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||||||||||||||| || || ||||| || | || || ||||| || ||||| ||
Sbjct 151869 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 151928
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || | |||||| || | || | || ||| |||||| ||| ||| || | |
Sbjct 151929 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 151988
Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | || || |||| ||||| || | |||||||| || ||||| || |||||
Sbjct 151989 TCAATTGTATCGGAGCTC---TCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 152045
Query 43170 ACAAAGATTTGCAT 43183
||||| || |||||
Sbjct 152046 ACAAAAATCTGCAT 152059
Score = 89.7 bits (98), Expect = 6e-13
Identities = 162/233 (70%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| || || | ||| | ||| | ||| | ||| ||||||||||| || || |||||
Sbjct 171389 CCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCA 171448
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| ||||| || ||||||| |||||||| | ||
Sbjct 171449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGGG 171508
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG---TTTGAGCGTCGCCACCGTGTC---GCTCGAT 43130
| || |||||||||| || | || | || | |||| | ||||| ||||
Sbjct 171509 ATGCCCTCCTTGTCC-TGTATCTTAGCCTTTACATTGTCG--ATGGTGTCCGAGCTC--- 171562
Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || | ||||| || || || || || ||||| ||||| || |||||
Sbjct 171563 TCCACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615
>seq25488
Length=371609
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || ||||| || || |||||||| || | || || ||||||||||| |||||
Sbjct 181524 CTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGCTTACCGGCGAA 181465
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || || |||||||| | || | || ||||||||| || | || | | | |||
Sbjct 181464 GATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC-TGGATCTTGGCCTTAACGT 181406
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| |||||||| || | || || || || |||||||| || || |
Sbjct 181405 TGTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTTAGGGTTTTCA 181346
Query 43171 CAAAGATTTGCATTTT 43186
| ||||| ||||| ||
Sbjct 181345 CGAAGATCTGCATCTT 181330
>seq19607
Length=286188
Score = 96.9 bits (106), Expect = 4e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || ||||||||||| || || || || |||| || |||||||| || |||||
Sbjct 225701 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 225642
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | ||||| || || | ||| | || |||||| ||| ||| ||| || | |
Sbjct 225641 ATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTTGCCTTAACGTTA 225582
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | || || || ||||| |||| ||||| || || |||||||| || || ||
Sbjct 225581 TCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGAGTTTTGACG 225522
Query 43173 AAGATTTGCATTTTTACGCCG 43193
||||| ||||| ||| || ||
Sbjct 225521 AAGATCTGCATCTTTCCGTCG 225501
>seq38797
Length=1288649
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||||||||| ||||| || ||||| || || | || || |||||||| || || ||
Sbjct 629182 CTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 629123
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||| || | ||| ||||| | || | | |||||||||| || | || | | | |||
Sbjct 629122 TATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCC-TGGATCTTGGCCTTAACGT 629064
Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | ||||| |||| || || || | |||||||| ||||| ||||| ||||
Sbjct 629063 TGTCAATGGTGTCAGAGCTC---TCAACCTCTAAGGTGATGGTCTTGCCGGTTAGAGTCT 629007
Query 43168 TTACAAAGATTTGCAT 43183
| || ||||| |||||
Sbjct 629006 TCACGAAGATCTGCAT 628991
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || | ||| | |||| ||| | ||| |||||| || || |||||||||||
Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| || || || || || | ||||||||| | ||
Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132
| | ||| |||||| || | || | | | ||| | | | ||||| |||| ||
Sbjct 628869 ATACCCTCTTTGTCC-TGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTC---TC 628814
Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || | ||||| || ||||| || || |||||||| ||||| |||||
Sbjct 628813 AACCTCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763
>seq40947
Length=4604
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/194 (70%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || |||||||| |||| || || || | || || ||||||||||| |||||
Sbjct 1643 TCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCATCCTCAAGCTGCTTACCGGCGAAG 1584
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || | |||||||| | | | || ||||||||| ||| || || | ||
Sbjct 1583 ATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTC 1524
Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | ||||| |||| ||||| |||| || ||||| ||||| || || || ||
Sbjct 1523 TCAATGGTGTCGGAGCTC---TCCACCTCGAGTGTAATGGTCTTGCCTGTGAGGGTTTTG 1467
Query 43170 ACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 1466 ACAAAGATCTGCAT 1453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571296516916560
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