Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15016 105 8e-18 seq41242 104 3e-17 seq25488 98.7 1e-15 seq19607 96.9 4e-15 seq38797 95.1 1e-14 seq40947 86.0 7e-12 >seq15016 Length=583550 Score = 105 bits (116), Expect = 8e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||||||||| || || || || |||| || |||||||| || ||||| Sbjct 437720 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 437661 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||| || || | ||| | || |||||| ||| || |||||| | | ||| Sbjct 437660 ATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCC-TGGATTTTTGCCTTAACGTT 437602 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || || ||||| |||| ||||| || || |||||||| || || || Sbjct 437601 GTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGAC 437542 Query 43172 AAAGATTTGCATTTTTACGCCG 43193 ||||| ||||| ||| || || Sbjct 437541 GAAGATCTGCATCTTTCCGTCG 437520 >seq41242 Length=195047 Score = 104 bits (114), Expect = 3e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| || || || || | || || ||||| || |||||||| Sbjct 170969 TCCTTCTGAATATTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAG 171028 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | |||||| || | ||| | | |||||||||| ||| ||| |||| | Sbjct 171029 ATTAGCCTCTGCTGATCTGGCGGGATCCCCTCCTTGTCCTGGATCTTTGCCTTGACATTA 171088 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| |||| || || || | |||||||| || || || |||||||| Sbjct 171089 TCGATGGTGTCCGAGCTC---TCTACTTCTAAGGTGATGGTCTTTCCAGTAAGCGTCTTC 171145 Query 43170 ACAAAGATTTGCAT 43183 ||||| |||||||| Sbjct 171146 ACAAATATTTGCAT 171159 Score = 104 bits (114), Expect = 3e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || ||||| || || |||| || |||||||| || || ||| Sbjct 171197 TCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAAT 171256 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | |||||||||| || | || |||||||||| |||||| || | | Sbjct 171257 ATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTG 171316 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | || || |||| ||||| || | ||||||||||| || || || ||||| Sbjct 171317 TCAATGGTATCAGAGCTC---TCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTG 171373 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 171374 ACAAAGATCTGCAT 171387 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||||||||| || || ||||| || | || || ||||| || ||||| || Sbjct 146705 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 146764 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | |||||| || | || | || ||| |||||| ||| ||| || | | Sbjct 146765 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 146824 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | || || |||| ||||| || | |||||||| || ||||| || ||||| Sbjct 146825 TCAATTGTATCGGAGCTC---TCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 146881 Query 43170 ACAAAGATTTGCAT 43183 ||||| || ||||| Sbjct 146882 ACAAAAATCTGCAT 146895 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||||||||| || || ||||| || | || || ||||| || ||||| || Sbjct 151869 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 151928 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | |||||| || | || | || ||| |||||| ||| ||| || | | Sbjct 151929 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 151988 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | || || |||| ||||| || | |||||||| || ||||| || ||||| Sbjct 151989 TCAATTGTATCGGAGCTC---TCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 152045 Query 43170 ACAAAGATTTGCAT 43183 ||||| || ||||| Sbjct 152046 ACAAAAATCTGCAT 152059 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | ||| | ||| | ||| ||||||||||| || || ||||| Sbjct 171389 CCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCA 171448 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || ||||||| |||||||| | || Sbjct 171449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGGG 171508 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG---TTTGAGCGTCGCCACCGTGTC---GCTCGAT 43130 | || |||||||||| || | || | || | |||| | ||||| |||| Sbjct 171509 ATGCCCTCCTTGTCC-TGTATCTTAGCCTTTACATTGTCG--ATGGTGTCCGAGCTC--- 171562 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 171563 TCCACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615 >seq25488 Length=371609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||| || || |||||||| || | || || ||||||||||| ||||| Sbjct 181524 CTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGCTTACCGGCGAA 181465 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || |||||||| | || | || ||||||||| || | || | | | ||| Sbjct 181464 GATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC-TGGATCTTGGCCTTAACGT 181406 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| |||||||| || | || || || || |||||||| || || | Sbjct 181405 TGTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTTAGGGTTTTCA 181346 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 181345 CGAAGATCTGCATCTT 181330 >seq19607 Length=286188 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||||||||| || || || || |||| || |||||||| || ||||| Sbjct 225701 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 225642 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||| || || | ||| | || |||||| ||| ||| ||| || | | Sbjct 225641 ATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTTGCCTTAACGTTA 225582 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || || ||||| |||| ||||| || || |||||||| || || || Sbjct 225581 TCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGAGTTTTGACG 225522 Query 43173 AAGATTTGCATTTTTACGCCG 43193 ||||| ||||| ||| || || Sbjct 225521 AAGATCTGCATCTTTCCGTCG 225501 >seq38797 Length=1288649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || ||||| || || | || || |||||||| || || || Sbjct 629182 CTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 629123 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||| || | ||| ||||| | || | | |||||||||| || | || | | | ||| Sbjct 629122 TATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCC-TGGATCTTGGCCTTAACGT 629064 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | |||||||| ||||| ||||| |||| Sbjct 629063 TGTCAATGGTGTCAGAGCTC---TCAACCTCTAAGGTGATGGTCTTGCCGGTTAGAGTCT 629007 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 629006 TCACGAAGATCTGCAT 628991 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | |||| ||| | ||| |||||| || || ||||||||||| Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || || || | ||||||||| | || Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||| |||||| || | || | | | ||| | | | ||||| |||| || Sbjct 628869 ATACCCTCTTTGTCC-TGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTC---TC 628814 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 628813 AACCTCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763 >seq40947 Length=4604 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| |||| || || || | || || ||||||||||| ||||| Sbjct 1643 TCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCATCCTCAAGCTGCTTACCGGCGAAG 1584 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | |||||||| | | | || ||||||||| ||| || || | || Sbjct 1583 ATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTC 1524 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| |||| ||||| |||| || ||||| ||||| || || || || Sbjct 1523 TCAATGGTGTCGGAGCTC---TCCACCTCGAGTGTAATGGTCTTGCCTGTGAGGGTTTTG 1467 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 1466 ACAAAGATCTGCAT 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571296516916560