Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq41242 118 7e-22 seq38797 91.5 1e-13 seq25488 91.5 1e-13 seq40947 89.7 3e-13 >seq41242 Length=195047 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| ||| ||||| ||||||||||||| || ||| |||| Sbjct 172088 AGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 172147 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || || || || |||| |||||| || ||| | || |||||| || Sbjct 172148 TCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCC 172207 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | || | |||| || || || | |||||||| Sbjct 172208 TGGATC-TTAGCTTTCACATTATCGATGGTGTCGGAGCTCTCCACTTCAAGTGTGATGGT 172266 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| ||||| ||||||||||||||| Sbjct 172267 CTTGCCGGTGAGGGTTTTGACAAAGATCTGCATC 172300 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || || ||||| | || ||| || || ||||||||||| | | Sbjct 171161 CCACCACGAAGTCTAAGTACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCC 171220 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| |||| ||||||||| || || || | || ||||||||| || Sbjct 171221 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGG 171280 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||||||| || ||||| ||| | || | | || | ||| | || | Sbjct 171281 ATGCCCTCCTTGTC--CTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCA 171338 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||||||||| || ||||| || || |||||||||||||| Sbjct 171339 CCTCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 171387 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || |||||||| ||||||||||| | || ||| | || Sbjct 146912 AGCACCAGGTGAAGGGTTGACTCTTTCTGAATGTTGTAGTCCGCGAGGGTGCGGCCATCC 146971 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || |||| ||||||||| ||| | || |||||| || Sbjct 146972 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCC 147031 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||| || ||| | | | |||| |||| || || || | |||||||| Sbjct 147032 TGTATTTTAGCCTTCACGTTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTGATGGTC 147091 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||||||| || || || ||||||||||||||| ||| Sbjct 147092 TTGCCGGTAAGGGTCTTAACAAAGATCTGCATCCCTC 147128 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || |||||||| ||||||||||| | || ||| | || Sbjct 152076 AGCACCAGGTGAAGGGTTGACTCTTTCTGAATGTTGTAGTCCGCGAGGGTGCGGCCATCC 152135 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || |||| ||||||||| ||| | || |||||| || Sbjct 152136 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCC 152195 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||| || ||| | | | |||| |||| || || || | |||||||| Sbjct 152196 TGTATTTTAGCCTTCACGTTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTGATGGTC 152255 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||||||| || || || ||||||||||||||| ||| Sbjct 152256 TTGCCGGTAAGGGTCTTAACAAAGATCTGCATCCCTC 152292 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| || || || ||||||||||| | || ||| | || Sbjct 171860 AGCACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 171919 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | || ||||||||| ||| | || |||||| || Sbjct 171920 TCAAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCC 171979 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCG----ATTCGACGTCCACCGTGAT 34353 ||||| ||| | | |||||| | |||| || || || | ||||| Sbjct 171980 TGGATCTTAGCCTTCA----CGTTATCGATTGTGTCGGAGCTCTCCACCTCAAGGGTGAT 172035 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||| ||||| ||||| || || || || ||||||||| ||| Sbjct 172036 GGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATCCCTC 172076 >seq38797 Length=1288649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||||| ||||||||||||| || | || || |||| || | |||||||| || || Sbjct 629409 TCTTTCTGGATGTTGTAGTCGGCCAAGGTG-CGTCCGTCCTCAAGTTGCTTGCCCGCAAA 629351 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| ||| ||||| || | || |||||| || ||||| ||| | | Sbjct 629350 GATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 629291 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| ||| || || | |||||||| || || ||||| || ||||| Sbjct 629290 GTCGATGGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTCTTTCCAGTGAGCGTCTTCAC 629231 Query 34378 AAAGATCTGCATCGCTC 34394 |||||||||||| ||| Sbjct 629230 GAAGATCTGCATCCCTC 629214 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || | ||| | |||| || || || ||||||||||| | ||| ||| | || Sbjct 629202 AGGACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCC 629143 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || |||| ||| ||||| ||| | | ||||||||| Sbjct 629142 TCAAGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCC 629083 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || || | |||||||| Sbjct 629082 TGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAAGGTGATGGTC 629023 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||||||| ||||| ||||| |||||||||||| ||| Sbjct 629022 TTGCCGGTTAGAGTCTTCACGAAGATCTGCATCCCTC 628986 >seq25488 Length=371609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| || || ||||||| | Sbjct 181559 CCTCCGCGGAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCC 181500 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || || || |||||||| || Sbjct 181499 AGAGTACGTCCATCCTCGAGCTGCTTACCGGCGAAGATAAGGCGTTGCTGGTCCGGAGGA 181440 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | ||||| ||||| || Sbjct 181439 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTATCGGAGGATTCCACC 181380 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || || || || || || || |||||||| |||||||||||| Sbjct 181379 TCCAGGGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 181332 >seq40947 Length=4604 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||||| ||| || ||||| |||||||||||||| || ||| |||| Sbjct 1208 AGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 1149 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || |||| ||||||||| || | | ||||||||| Sbjct 1148 TCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC- 1090 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | | | |||| |||| || || || | ||||| | Sbjct 1089 -CTGGATTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACCTCAAGGGTGATTG 1031 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | ||||||||||| || || || || ||||||||| Sbjct 1030 TCTTGCCGGTGAGGGTCTTAACGAATATCTGCATC 996 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || |||||||||||| |||||||| | Sbjct 1907 CCACCGCGAAGGCGAAGAACGAGGTGAAGGGTTGATTCTTTCTGTATATTGTAGTCCGCA 1848 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | |||||| || || || ||||||| ||||| || || Sbjct 1847 AGCGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTTTGCTGATCCGGCGGA 1788 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | || | ||| | || ||| Sbjct 1787 ATCCCCTCCTTATCTTGAATCTTCGACTTCACATTCTCAATTGTATCCGAGCTCTCCACG 1728 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 1727 TCCAGGGTGATCGTTTTACCAGTAAGAGTCTTAACAAAAATCTGCAT 1681 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||| ||||| | || ||| ||||| || |||||||| || Sbjct 1680 TCCACCACGAAGGCGGAGCACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCAGA 1621 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG- 34280 || ||| | || || | |||||| || ||||| || |||| |||||||| ||| Sbjct 1620 TAGGGTTCGGCCATCCTCAAGCTGCTTACCGGCGAAGATTAGCCTTTGCTGGTC--CGGA 1563 Query 34281 GC-ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | || |||||||| ||||| ||| | | | || | |||| || Sbjct 1562 GCGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATGGTGTCGGAGCTCTCC 1503 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || || | || ||||| ||||| ||||| ||||| ||||||||||||||| ||| Sbjct 1502 ACCTCGAGTGTAATGGTCTTGCCTGTGAGGGTTTTGACAAAGATCTGCATCCCTC 1448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322784952749120