Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq40947 116 3e-21 seq38797 116 3e-21 seq41242 107 2e-18 >seq40947 Length=4604 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || || |||| || || ||||| |||||||| Sbjct 1188 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAA 1129 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| || ||| ||||| || || | |||||||||||| ||||| |||||| Sbjct 1128 TATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATTTTGGTCTTAACGTT 1069 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||||||||| | ||| || |||||||| || || ||||| || Sbjct 1068 CTCGATCGTGTCGGAACTCTCCACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAAC 1009 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 1008 GAATATCTGCAT 997 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||| ||| || ||| |||| || ||||| Sbjct 1428 GTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCAAGTTG 1369 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| || ||| ||||| || || | |||||||||||| ||||| Sbjct 1368 CTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATTTT 1309 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | | | ||||| || ||| || || | |||||| ||||| || || Sbjct 1308 GGACTTAACGTTCTCGATGGTGTCCGAACTCTCTACGTCAAGGGTAATAGTCTTCCCTGT 1249 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| | ||||| ||||| Sbjct 1248 GAGAGTCTTGATGAAGATCTGCAT 1225 >seq38797 Length=1288649 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || ||||| || || |||||| |||||||||||||| ||| ||| | || || Sbjct 629199 ACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 629140 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| ||||||| || ||||||||| || || | |||||||||||| Sbjct 629139 AGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTGG 629080 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| | ||| ||||| | ||| || |||||| Sbjct 629079 ATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAAGGTGATGGTCTTG 629020 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| ||||| ||||| Sbjct 629019 CCGGTTAGAGTCTTCACGAAGATCTGCAT 628991 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||| ||| ||||||||||| ||||| || ||| |||| || || || Sbjct 629650 GTGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTG 629591 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| ||||| || || | || || ||||| || || | |||||||||||| || || Sbjct 629590 TTTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTT 629531 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | ||||| | ||||||||||| ||| || || || || || Sbjct 629530 TGCCTTTACGTTGTCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAGT 629471 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| |||||||| Sbjct 629470 GAGGGTCTTCACAAATATTTGCAT 629447 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||| || || ||| | || || || ||| Sbjct 628737 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCAAGCTGT 628678 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || |||| || || || || ||||| | |||||||||||| || || Sbjct 628677 TTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTG 628618 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | ||| || ||||||||| | ||| ||||||||||| || Sbjct 628617 GCCTTTACGTTGTCAATAGTATCCGAACTCTCCACCTCGAGGGTGATCGTCTTGCCGGTG 628558 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||| ||||| ||||| Sbjct 628557 AGAGTCTTCACGAAGATCTGCAT 628535 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| |||||||| || || ||| | || || Sbjct 628971 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCA 628912 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||| |||||| Sbjct 628911 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATACCCTCTTTGTCCTGG 628852 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| | ||| ||||| | ||| ||||||||| Sbjct 628851 ATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATCGTCTTG 628792 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || ||||| ||||| Sbjct 628791 CCAGTGAGAGTCTTTACGAAGATCTGCAT 628763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||| ||||| |||||||||||| || ||| |||| || ||||| Sbjct 629422 GTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGTCCGTCCTCAAGTTG 629363 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | || ||||||||| ||||| | |||||||| ||| || || Sbjct 629362 CTTGCCCGCAAAGATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTT 629303 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | || ||||| | ||| || ||||| || || Sbjct 629302 GGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTCTTTCCAGT 629243 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 629242 GAGCGTCTTCACGAAGATCTGCAT 629219 >seq41242 Length=195047 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | ||| | ||| || || ||||| |||||||||||||| | Sbjct 171161 CCACCACGAAGTCTAAGTACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCC 171220 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| ||||| || || ||||| |||||||||| || ||||||||||| Sbjct 171221 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGG 171280 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||||| ||| || | | | | || | ||||||| Sbjct 171281 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACC 171340 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || || || || || ||||| |||||||| ||||| Sbjct 171341 TCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 171387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||| ||||||||||||||||| || ||| | || || Sbjct 146915 ACCAGGTGAAGGGTTGACTCTTTCTGAATGTTGTAGTCCGCGAGGGTGCGGCCATCCTCA 146974 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||||| ||| Sbjct 146975 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGT 147034 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| || ||| ||||| | ||| || |||||| Sbjct 147035 ATTTTAGCCTTCACGTTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTGATGGTCTTG 147094 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 147095 CCGGTAAGGGTCTTAACAAAGATCTGCAT 147123 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||| ||||||||||||||||| || ||| | || || Sbjct 152079 ACCAGGTGAAGGGTTGACTCTTTCTGAATGTTGTAGTCCGCGAGGGTGCGGCCATCCTCA 152138 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||||| ||| Sbjct 152139 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGT 152198 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| || ||| ||||| | ||| || |||||| Sbjct 152199 ATTTTAGCCTTCACGTTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTGATGGTCTTG 152258 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 152259 CCGGTAAGGGTCTTAACAAAGATCTGCAT 152287 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| ||||| || || |||| | || || || |||||||| ||||| Sbjct 170969 TCCTTCTGAATATTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAG 171028 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || ||| || || || || | |||||||||||| || ||| ||| || Sbjct 171029 ATTAGCCTCTGCTGATCTGGCGGGATCCCCTCCTTGTCCTGGATCTTTGCCTTGACATTA 171088 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| | ||| || || | ||| || ||||| || || || ||||||||| Sbjct 171089 TCGATGGTGTCCGAGCTCTCTACTTCTAAGGTGATGGTCTTTCCAGTAAGCGTCTTCACA 171148 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 171149 AATATTTGCAT 171159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394724178400942