Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq41242 86.0 5e-12 >seq41242 Length=195047 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||||||||| | |||||| || ||||| ||||||||||||||||| ||| Sbjct 171161 CCACCACGAAGTCTAAGTACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCC 171220 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || |||| || ||||| ||| | || | ||||| || || || Sbjct 171221 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGG 171280 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || |||| ||| || | ||| || ||| | ||| Sbjct 171281 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACC 171340 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| |||| || || | || || ||||| || ||||| Sbjct 171341 TCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 171387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379006955463990