Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 174 1e-38
seq25504 127 2e-24
seq41242 98.7 9e-16
seq38797 89.7 5e-13
seq25488 82.4 7e-11
>seq55201
Length=1221137
Score = 174 bits (192), Expect = 1e-38
Identities = 397/588 (68%), Gaps = 12/588 (2%)
Strand=Plus/Plus
Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604
|||||||||||| ||||| | || ||| | |||||||| || ||||| || || ||
Sbjct 300864 CATGTTTCCGATCCGCTATCCGCAGATCTGGGAGATGTACAAGAAAGCAGAGGCTTCCTT 300923
Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664
||||| | ||||| || ||||| || | || ||| | | |||||| | | || |
Sbjct 300924 CTGGACTGCGGAAGAGGTCGACCTCTCACAAGACCTGCGTCACTGGGAT-CACACACTTA 300982
Query 57665 A-TCTGA---GAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTA 57720
|| || | | | || | | ||||| | || || || ||||| || |||||||
Sbjct 300983 CCTCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTTGCCGCTTCAGATGGTA 301042
Query 57721 TTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGAT 57780
| || ||||| | | || |||| | ||||| ||| | ||||||| |
Sbjct 301043 TCGTCCTTGAGAACCTAGCCGGCCGATTCATGCGCGAAGTTCAACTCCCGGAGGCTCGCG 301102
Query 57781 GCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCA 57840
|| ||||| ||||| | |||||||||||| | || || ||||||||| || |||
Sbjct 301103 CATTCTACGGCTTTCAGATCGCCATTGAAAACATTCACTCCGAAATGTATAGTCTTCTCC 301162
Query 57841 TCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900
|||| || ||| | || ||| | || ||| || || || ||||| || |
Sbjct 301163 TCGAGACTTACATCAAAGACTCAAAGGAAAAATCCCTCCTTTTTCGTGCCATCGAGACCA 301222
Query 57901 TGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCC 57959
| ||| ||| |||| ||||| ||||| | | ||||| | |||| | |
Sbjct 301223 TCCCCTGCG-TCGCTCGCAAGGCTCAGTGGGCGCTGCGCTGGATTGA---CGCCTCTGAT 301278
Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019
|| || || ||| || | |||| ||||| ||| |||||||| ||||| || ||||||
Sbjct 301279 ACATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGC 301338
Query 58020 TT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078
|| |||| || | || ||| | ||||| ||||| |||||||||| || || || |||
Sbjct 301339 TTCTGCGCCA-TCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAA 301397
Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126
|||| ||||||| || || |||||||||||| || ||||| |||||
Sbjct 301398 CGAGCTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGCCTGCCT 301445
>seq25504
Length=639989
Score = 127 bits (140), Expect = 2e-24
Identities = 486/753 (65%), Gaps = 20/753 (3%)
Strand=Plus/Minus
Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605
||||||||||| ||||| | || ||| | |||||||| || || ||||| || ||
Sbjct 367968 ATGTTTCCGATACGCTATCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTC 367909
Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT---TCCCTCAAA 57662
||||| | || ||||| ||||| || | || || | | |||||| |||||||
Sbjct 367908 TGGACAGCAGAGGAAGTCGACCTCTCCCAAGACCTCCGTCACTGGGATCAATCCCTCACC 367849
Query 57663 GAATCTGA---GAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719
||||| | | | || | | ||||| | || || || || ||||| |||||
Sbjct 367848 ---TCTGACGAGCGCCACTTCGTCACCCACGTTCTCGCCTTCTTTGCTGCATCTGATGGA 367792
Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGA 57777
|| || |||||| | | || | || || || | || || | |||||||
Sbjct 367791 ATCGTCCTCGAGAACCTTGCCGGCCGCTT--CATGAGGGAGGTACAGCTCCCGGAGGCTC 367734
Query 57778 GATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTAC 57837
| ||| || |||||||| | ||||| |||||| | || || || ||||| || |
Sbjct 367733 GCGCCTTCTATGGATTTCAGATTGCCATCGAAAACATCCACTCCGAGATGTACAGCCTTC 367674
Query 57838 TCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAA 57897
| |||| || ||| | || || | |||||| || ||| | || ||||| |
Sbjct 367673 TTCTCGAAACATACATCAAAGATTCCTGTGAGAAATCCCATCTCTTCCATGCCATCGAGA 367614
Query 57898 CAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956
| | ||| ||| ||||| ||||| ||||| | | ||||| | |||| |
Sbjct 367613 CCGTCCCCTGCG-TCGCCCGCAAGGCTCAGTGGGCCCTACGTTGGATCGA---CGCCTCC 367558
Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016
| || || ||| | | | ||||| || ||| || || || ||||| || ||
Sbjct 367557 AATTCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGT 367498
Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076
||||| || || || ||| | ||||| | || || |||||||| || || || |
Sbjct 367497 AGCTTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCC 367438
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | ||||| || ||||||||||| || ||| ||||| ||||| | |||
Sbjct 367437 AACGAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGCTTGCCTTCTCTACAGC 367378
Query 58137 CACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196
| | | |||||| | | |||| | | || ||||| |||| || ||||
Sbjct 367377 CTCCTCAACAATAAGCTCTCTGAGGATAGGGTTCGAGAGATTATTTCCGATGCTGTCGAT 367318
Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCT-ACCGGTGGCCATGCTCGGTATGAACAATGA 58255
|| || | ||||| ||| ||| || || || ||| | || | || ||||| |||
Sbjct 367317 ATAGAGAGGGAGTTCGTCTGCGATGCTCTCCCCTGTGCTCTTG-TGGGGATGAATGCTGA 367259
Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288
| | ||| ||||||| ||||||||||||||
Sbjct 367258 TCTCATGAGCCAGTACATAGAGTTTGTTGCCGA 367226
>seq41242
Length=195047
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || || ||||| |||||| | || || || ||
Sbjct 171387 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAGAGCTCT 171328
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | ||| ||||||||| ||| | || |||||||||
Sbjct 171327 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 171268
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | | ||||| || ||||| ||| |||| ||| || || || || |||
Sbjct 171267 CAAAGGTTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTGGCAGACTACAAC 171208
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| |||||||| ||||| || ||||||||||| | || ||||
Sbjct 171207 ATTCAAAAGGAATCGACCCTTCACCTAGTACTTAGACTTCGTGGTGGTA 171159
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || || || || |||||| | || || || ||
Sbjct 171615 ATGCAGATATTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCG 171556
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | ||| ||||||||| ||| | || || ||||||
Sbjct 171555 GACACCATCGACAATGTAAAGGCTAAGATACAGGACAAGGAGGGCATCCCCCCGGACCAG 171496
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | || || || |||||||| ||| | || || || | || ||||||
Sbjct 171495 CAAAGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCTGACTATAAC 171436
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| ||||| || || ||||| || ||| | || ||||| ||||
Sbjct 171435 ATTCAAAAGGAATCCACCCTCCATCTTGTGCTTCGTCTTAGGGGTGGTA 171387
>seq38797
Length=1288649
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || |||||||||||||| || ||||| ||||||||| | || ||||| ||
Sbjct 628763 ATGCAGATCTTCGTAAAGACTCTCACTGGCAAGACGATCACCCTAGAGGTTGAGAGCTCT 628822
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || |||| | | | || || |||||| || || | || || |||||
Sbjct 628823 GACACCATTGACAACGTTAAGGCCAAG-ATCCAGGACAAAGAGGGTATCCCCCCGGACCA 628881
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || || ||||| ||| | ||||| || | ||||| ||
Sbjct 628882 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 628941
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || |||||||| || | |||||||| ||
Sbjct 628942 CATCCAGAAGGAGTCCACCCTCCATCTGGTTCTCCGTCTGAGGGGAGG 628989
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || |||||| | || ||||| ||
Sbjct 628991 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACCATCACCTTAGAGGTTGAGAGCTCT 629050
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || |||| | | | ||| | ||||||||| || | || || |||||
Sbjct 629051 GACACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCGGACCA 629109
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || ||||| || ||||| ||| | || || || || || || ||
Sbjct 629110 ACAGAGGCTGATATTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAA 629169
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||| || || |||||||| | || || | |||||||| ||
Sbjct 629170 CATTCAAAAGGAGTCTACTCTTCACTTAGTCCTCCGTCTGAGGGGAGG 629217
>seq25488
Length=371609
Score = 82.4 bits (90), Expect = 7e-11
Identities = 170/244 (70%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || || || || || || ||||| ||| | || || ||| |
Sbjct 181330 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATTACCCTGGAGGTGGAATCC 181389
Query 31250 TCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| | | || |||| | | | ||| | ||||||||||||| | || || ||
Sbjct 181390 TCCGATACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCGGA 181448
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367
|||||| || || || ||||| || || ||| | || || | | | ||| || ||| |
Sbjct 181449 CCAGCAACGCCTTATCTTCGCCGGTAAGCAGCTCGAGGA-TGGACGTACTCTGGCCGACT 181507
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGG-GGCGGT-AGA 31423
|||| || || || || ||||| || || || || ||| | || | || |||| | |||
Sbjct 181508 ATAATATCCAGAAGGAGTCGACCCTCCACCTCGTCCTTCGCCTCCGCGGAGGCGCTAAGA 181567
Query 31424 AGCG 31427
||||
Sbjct 181568 AGCG 181571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445360184223840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |