Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq55201 174 1e-38 seq25504 127 2e-24 seq41242 98.7 9e-16 seq38797 89.7 5e-13 seq25488 82.4 7e-11 >seq55201 Length=1221137 Score = 174 bits (192), Expect = 1e-38 Identities = 397/588 (68%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||||||||| ||||| | || ||| | |||||||| || ||||| || || || Sbjct 300864 CATGTTTCCGATCCGCTATCCGCAGATCTGGGAGATGTACAAGAAAGCAGAGGCTTCCTT 300923 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||| | ||||| || ||||| || | || ||| | | |||||| | | || | Sbjct 300924 CTGGACTGCGGAAGAGGTCGACCTCTCACAAGACCTGCGTCACTGGGAT-CACACACTTA 300982 Query 57665 A-TCTGA---GAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTA 57720 || || | | | || | | ||||| | || || || ||||| || ||||||| Sbjct 300983 CCTCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTTGCCGCTTCAGATGGTA 301042 Query 57721 TTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGAT 57780 | || ||||| | | || |||| | ||||| ||| | ||||||| | Sbjct 301043 TCGTCCTTGAGAACCTAGCCGGCCGATTCATGCGCGAAGTTCAACTCCCGGAGGCTCGCG 301102 Query 57781 GCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCA 57840 || ||||| ||||| | |||||||||||| | || || ||||||||| || ||| Sbjct 301103 CATTCTACGGCTTTCAGATCGCCATTGAAAACATTCACTCCGAAATGTATAGTCTTCTCC 301162 Query 57841 TCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900 |||| || ||| | || ||| | || ||| || || || ||||| || | Sbjct 301163 TCGAGACTTACATCAAAGACTCAAAGGAAAAATCCCTCCTTTTTCGTGCCATCGAGACCA 301222 Query 57901 TGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCC 57959 | ||| ||| |||| ||||| ||||| | | ||||| | |||| | | Sbjct 301223 TCCCCTGCG-TCGCTCGCAAGGCTCAGTGGGCGCTGCGCTGGATTGA---CGCCTCTGAT 301278 Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019 || || || ||| || | |||| ||||| ||| |||||||| ||||| || |||||| Sbjct 301279 ACATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGC 301338 Query 58020 TT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078 || |||| || | || ||| | ||||| ||||| |||||||||| || || || ||| Sbjct 301339 TTCTGCGCCA-TCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAA 301397 Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 |||| ||||||| || || |||||||||||| || ||||| ||||| Sbjct 301398 CGAGCTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGCCTGCCT 301445 >seq25504 Length=639989 Score = 127 bits (140), Expect = 2e-24 Identities = 486/753 (65%), Gaps = 20/753 (3%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||||||||| ||||| | || ||| | |||||||| || || ||||| || || Sbjct 367968 ATGTTTCCGATACGCTATCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTC 367909 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT---TCCCTCAAA 57662 ||||| | || ||||| ||||| || | || || | | |||||| ||||||| Sbjct 367908 TGGACAGCAGAGGAAGTCGACCTCTCCCAAGACCTCCGTCACTGGGATCAATCCCTCACC 367849 Query 57663 GAATCTGA---GAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 ||||| | | | || | | ||||| | || || || || ||||| ||||| Sbjct 367848 ---TCTGACGAGCGCCACTTCGTCACCCACGTTCTCGCCTTCTTTGCTGCATCTGATGGA 367792 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGA 57777 || || |||||| | | || | || || || | || || | ||||||| Sbjct 367791 ATCGTCCTCGAGAACCTTGCCGGCCGCTT--CATGAGGGAGGTACAGCTCCCGGAGGCTC 367734 Query 57778 GATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTAC 57837 | ||| || |||||||| | ||||| |||||| | || || || ||||| || | Sbjct 367733 GCGCCTTCTATGGATTTCAGATTGCCATCGAAAACATCCACTCCGAGATGTACAGCCTTC 367674 Query 57838 TCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAA 57897 | |||| || ||| | || || | |||||| || ||| | || ||||| | Sbjct 367673 TTCTCGAAACATACATCAAAGATTCCTGTGAGAAATCCCATCTCTTCCATGCCATCGAGA 367614 Query 57898 CAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956 | | ||| ||| ||||| ||||| ||||| | | ||||| | |||| | Sbjct 367613 CCGTCCCCTGCG-TCGCCCGCAAGGCTCAGTGGGCCCTACGTTGGATCGA---CGCCTCC 367558 Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016 | || || ||| | | | ||||| || ||| || || || ||||| || || Sbjct 367557 AATTCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGT 367498 Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076 ||||| || || || ||| | ||||| | || || |||||||| || || || | Sbjct 367497 AGCTTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCC 367438 Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | ||||| || ||||||||||| || ||| ||||| ||||| | ||| Sbjct 367437 AACGAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGCTTGCCTTCTCTACAGC 367378 Query 58137 CACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196 | | | |||||| | | |||| | | || ||||| |||| || |||| Sbjct 367377 CTCCTCAACAATAAGCTCTCTGAGGATAGGGTTCGAGAGATTATTTCCGATGCTGTCGAT 367318 Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCT-ACCGGTGGCCATGCTCGGTATGAACAATGA 58255 || || | ||||| ||| ||| || || || ||| | || | || ||||| ||| Sbjct 367317 ATAGAGAGGGAGTTCGTCTGCGATGCTCTCCCCTGTGCTCTTG-TGGGGATGAATGCTGA 367259 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 | | ||| ||||||| |||||||||||||| Sbjct 367258 TCTCATGAGCCAGTACATAGAGTTTGTTGCCGA 367226 >seq41242 Length=195047 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || ||||| |||||| | || || || || Sbjct 171387 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAGAGCTCT 171328 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | ||| ||||||||| ||| | || ||||||||| Sbjct 171327 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 171268 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | ||||| || ||||| ||| |||| ||| || || || || ||| Sbjct 171267 CAAAGGTTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTGGCAGACTACAAC 171208 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| |||||||| ||||| || ||||||||||| | || |||| Sbjct 171207 ATTCAAAAGGAATCGACCCTTCACCTAGTACTTAGACTTCGTGGTGGTA 171159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| | || || || || Sbjct 171615 ATGCAGATATTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCG 171556 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | ||| ||||||||| ||| | || || |||||| Sbjct 171555 GACACCATCGACAATGTAAAGGCTAAGATACAGGACAAGGAGGGCATCCCCCCGGACCAG 171496 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || |||||||| ||| | || || || | || |||||| Sbjct 171495 CAAAGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCTGACTATAAC 171436 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || || ||||| || ||| | || ||||| |||| Sbjct 171435 ATTCAAAAGGAATCCACCCTCCATCTTGTGCTTCGTCTTAGGGGTGGTA 171387 >seq38797 Length=1288649 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||||||||| || ||||| ||||||||| | || ||||| || Sbjct 628763 ATGCAGATCTTCGTAAAGACTCTCACTGGCAAGACGATCACCCTAGAGGTTGAGAGCTCT 628822 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | || || |||||| || || | || || ||||| Sbjct 628823 GACACCATTGACAACGTTAAGGCCAAG-ATCCAGGACAAAGAGGGTATCCCCCCGGACCA 628881 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | ||||| || Sbjct 628882 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 628941 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || |||||||| || | |||||||| || Sbjct 628942 CATCCAGAAGGAGTCCACCCTCCATCTGGTTCTCCGTCTGAGGGGAGG 628989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || ||||| || Sbjct 628991 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACCATCACCTTAGAGGTTGAGAGCTCT 629050 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | ||||||||| || | || || ||||| Sbjct 629051 GACACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCGGACCA 629109 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || ||||| || ||||| ||| | || || || || || || || Sbjct 629110 ACAGAGGCTGATATTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAA 629169 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || |||||||| | || || | |||||||| || Sbjct 629170 CATTCAAAAGGAGTCTACTCTTCACTTAGTCCTCCGTCTGAGGGGAGG 629217 >seq25488 Length=371609 Score = 82.4 bits (90), Expect = 7e-11 Identities = 170/244 (70%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||| ||| | || || ||| | Sbjct 181330 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATTACCCTGGAGGTGGAATCC 181389 Query 31250 TCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | || |||| | | | ||| | ||||||||||||| | || || || Sbjct 181390 TCCGATACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCGGA 181448 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||| || || || ||||| || || ||| | || || | | | ||| || ||| | Sbjct 181449 CCAGCAACGCCTTATCTTCGCCGGTAAGCAGCTCGAGGA-TGGACGTACTCTGGCCGACT 181507 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGG-GGCGGT-AGA 31423 |||| || || || || ||||| || || || || ||| | || | || |||| | ||| Sbjct 181508 ATAATATCCAGAAGGAGTCGACCCTCCACCTCGTCCTTCGCCTCCGCGGAGGCGCTAAGA 181567 Query 31424 AGCG 31427 |||| Sbjct 181568 AGCG 181571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445360184223840