Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq25504 145 1e-29
seq55201 138 1e-27
seq2987 102 1e-16
seq40021 95.1 2e-14
>seq25504
Length=639989
Score = 145 bits (160), Expect = 1e-29
Identities = 398/608 (65%), Gaps = 9/608 (1%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || || ||||||||||||||||| | | || | ||||| || || |||||
Sbjct 367391 CAAGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGA 367450
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
||||||||||| || | ||| || ||||| || |||| | ||| ||||| ||||||
Sbjct 367451 CCGGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAG 367510
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33758
||||| || || |||||| |||| | | |||| || || || | |||
Sbjct 367511 ATTCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGAGGCGTC---G 367567
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
||||| | | ||||| | ||||| || || || | || || |||||||
Sbjct 367568 ATCCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGG 367627
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||||| | ||| ||| |||||| | || || |||| | ||| || |||||
Sbjct 367628 AAGAGATGGGATTTCTCACAGGAATCTTTGATGTATGTTTCGAGAAGAAGGCTGTACATC 367687
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || || |||||||| ||||| ||||||||||| ||||| | |||||| | | |
Sbjct 367688 TCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCCTCCGGGAGC 367747
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | || || | || | || || || ||||||||| || |||
Sbjct 367748 TGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCAGATGCAGCA 367807
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAA 34055
|| || || | || || | | || | ||||| | || || || || |||
Sbjct 367808 AAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGATTGATCCCAG 367867
Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
| | || |||| || | || ||||| || ||||||| || || || || || ||
Sbjct 367868 TGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCTTCGGCTTTC 367927
Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175
|| ||||| | |||||| | | |||| | || || || ||| || | | || |||
Sbjct 367928 TTGTACATCTCCCAGATCTGAGGATAGCGTATCGGAAACATACAGAAGCGGTCGGGGTTT 367987
Query 34176 GGTGCAAG 34183
|| |||||
Sbjct 367988 GGGGCAAG 367995
>seq55201
Length=1221137
Score = 138 bits (152), Expect = 1e-27
Identities = 404/618 (65%), Gaps = 11/618 (2%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||||| || |||||||| || | | || | ||||| || || |||||
Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| | || ||||| || ||||| || |||| ||| || || |||||
Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAA 301323
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758
|| ||||| || ||| || || | || | ||| || | | | | | ||||
Sbjct 301322 ATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA--- 301266
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
||||| | ||||| | ||||| || || || || || || |||||| |
Sbjct 301265 ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGA 301206
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
|| || | |||||| || ||||| | ||||| |||| | |||||||||||||
Sbjct 301205 AAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATT 301146
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || ||||||||||||||||| |||||||| |||||||| | |||||| | |
Sbjct 301145 TCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGT 301086
Query 33939 TGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997
|| ||||| | || ||||| | |||| || ||| || || ||||| || ||
Sbjct 301085 TGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGC 301027
Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 34054
||| || || | || || | | || | ||||| | || ||| | || |||
Sbjct 301026 AAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCA 300967
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114
| | | |||| || | || || |||||| | ||||| || || |||||||| ||
Sbjct 300966 GTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTT 300907
Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174
|| ||||| | |||||| | |||| |||| || || || || | | || ||
Sbjct 300906 CTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACATGCAGAAGCGGTCGGGGTT 300847
Query 34175 TGGTGCAAGGATAGGTTC 34192
||| ||||| | ||| ||
Sbjct 300846 TGGAGCAAGAAGAGGCTC 300829
>seq2987
Length=13944
Score = 102 bits (112), Expect = 1e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
|| || ||||| | || | ||| || | |||| | |||| |||||| |||| ||||||
Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542
|||||| | ||||| || || ||| || | |||| ||||||||||||| || |||
Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
| ||| ||||| || || || || | ||| || ||||| || ||||| ||
Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861
Query 63603 CCTTCTATGCTATCATCGATCATG 63626
|| || ||||||||||| |||||
Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718
|| ||| || ||||| || | |||||| || || || ||||||||| | ||| | |
Sbjct 1993 AGGAGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAA 2052
Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778
||| || || | || || || || ||||| || || || || || | || | |||
Sbjct 2053 ATTATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCAT 2112
Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838
|||||||||||||||||||| |||| || | |||||| | ||||||| | ||
Sbjct 2113 CAACATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTC 2172
Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
| ||||||||||||||||| | || ||| || || || || |||||
Sbjct 2173 AAGCGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223
>seq40021
Length=871558
Score = 95.1 bits (104), Expect = 2e-14
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718
|| ||| |||||||| || |||||||||||||| || |||||||| | || | ||
Sbjct 117919 AGGAGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAG 117860
Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778
|| || || | || || || || ||||| || |||||| |||| || || | |||
Sbjct 117859 ATGATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCAT 117800
Query 63779 TAACATGTGCTGAGGTCTTT-CAACAATTTTGTTGTTTATTTTCAACAAG-TAGGATTTT 63836
| ||| ||||| || |||| || || ||| | | ||||| | ||| ||||| |
Sbjct 117799 CAGCATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTT--AGAAGATAGGACCTC 117742
Query 63837 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|| | ||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct 117741 TCGAGAGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689
Score = 86.0 bits (94), Expect = 8e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| ||||| | || | ||| || | |||| |||| | | |||||||| || ||
Sbjct 118230 TCCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCC 118171
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
||||| | |||||| || || || || | ||| |||||||||| || || ||
Sbjct 118170 ATTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGA 118111
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| || ||||| || || ||| |||| || || |||||| || ||||| ||
Sbjct 118110 GACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATAT 118051
Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643
|| || ||||||||||| ||||| || || || |||||
Sbjct 118050 TCCCTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCT 118009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629243662966560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |