Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq38797 102 8e-17 seq40947 89.7 5e-13 seq41242 84.2 2e-11 >seq38797 Length=1288649 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||||| |||| || ||||| || || ||||| ||||| | |||| Sbjct 628750 ACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCC 628691 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| |||||||| || ||| ||||||| | ||||||||| ||||| ||||| || || Sbjct 628690 ATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGGATGCCCTCCTT 628631 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || |||| | || | || || | ||||||||| | ||| | Sbjct 628630 GTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACCTCGAGGGTGAT 628571 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||||| | || || ||||| || ||||| Sbjct 628570 CGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 628535 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| |||||||| ||||||||||| || | |||| ||| || ||||| Sbjct 629650 GTGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTG 629591 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||| ||| |||| || | |||||| || || || || || || ||||| ||| || Sbjct 629590 TTTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTT 629531 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | || | |||||| | | ||||||||| | ||| | || || || || Sbjct 629530 TGCCTTTACGTTGTCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAGT 629471 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | || || || |||||||||||| Sbjct 629470 GAGGGTCTTCACAAATATTTGCATA 629446 >seq40947 Length=4604 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | |||||||| || || ||||| || ||| Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || |||||||| || || | ||||| | ||||| || || || Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| || ||| | | || | ||||||| |||||| Sbjct 1103 ATTCCCTCCTTGTCCTGGATTTTG-GTCTTAACGTTCTCGATCGTGTCGGAACTCTCCAC 1045 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||||||||| | || || |||||||| ||||| Sbjct 1044 CTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997 >seq41242 Length=195047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || ||||| || || ||||||||||| | || | | Sbjct 147136 ACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGAGTACGCCC 147195 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || |||||||| || |||||| ||||||| | ||||| || || || ||||| || || Sbjct 147196 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGAATGCCCTCCTT 147255 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || | ||||||| ||| ||||||| ||| | Sbjct 147256 ATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACCTCAAGGGTGAT 147315 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || || | ||||| ||||| || ||||| Sbjct 147316 CGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 147351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || ||||| || || ||||||||||| | || | | Sbjct 152300 ACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGAGTACGCCC 152359 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || |||||||| || |||||| ||||||| | ||||| || || || ||||| || || Sbjct 152360 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGAATGCCCTCCTT 152419 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || | ||||||| ||| ||||||| ||| | Sbjct 152420 ATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACCTCAAGGGTGAT 152479 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || || | ||||| ||||| || ||||| Sbjct 152480 CGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 152515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||| || || || ||||| || ||| | |||| ||| || | ||| Sbjct 172096 GTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAACTG 172155 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| || || ||||| || || || ||| || Sbjct 172156 CTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTT 172215 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | ||||||| | |||||| |||| || | ||||||||||| Sbjct 172216 AGCTTTCACATTATCGATGGTGTCGGAGCTCTCCACTTCAAGTGTGATGGTCTTGCCGGT 172275 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || || ||||| Sbjct 172276 GAGGGTTTTGACAAAGATCTGCAT 172299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495611949278400