Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 147 3e-30
seq25504 141 1e-28
seq2987 116 5e-21
seq40021 98.7 1e-15
>seq55201
Length=1221137
Score = 147 bits (162), Expect = 3e-30
Identities = 388/584 (66%), Gaps = 15/584 (3%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || ||||| || |||||||| || | | || || |||||||| || |||||
Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078
|||||||| | || ||||| || ||||| || |||| |||| | | ||||| |||||
Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCAGAGAAGAA 301324
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCAT 50134
|| ||||| || || || || | || | ||| || || | | || ||||
Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGC-GTCA- 301266
Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194
||||| | ||||| | ||||| || || || || || || ||||||
Sbjct 301265 --ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCAC 301208
Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254
||| || | |||||| || ||||| | ||||| |||| | |||||||||||
Sbjct 301207 GAAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACA 301148
Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314
|||| || ||||||||||||||||| |||||||| |||||||| | |||||| | |
Sbjct 301147 TTTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGA 301088
Query 50315 TCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
|| ||||| | || ||||| | |||| || ||| || || || || ||
Sbjct 301087 GTTGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCG 301029
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT---TTATTC 50430
||||| || || | || || | | || || |||| || || ||| | || |
Sbjct 301028 GCAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCC 300969
Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490
|| | | | |||| || | || || |||||| | ||||| || || ||||||||
Sbjct 300968 CAGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCT 300909
Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534
|| || ||||| | |||||| | |||| |||| || || ||
Sbjct 300908 TTCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACAT 300865
>seq25504
Length=639989
Score = 141 bits (156), Expect = 1e-28
Identities = 405/618 (66%), Gaps = 11/618 (2%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || || ||||||||||||||||| | | || || |||||||| || |||||
Sbjct 367391 CAAGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGA 367450
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078
||||||||||| || | ||| || ||||| || |||| | || || || || |||||
Sbjct 367451 CCGGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGG-CACAGAAGCTACCGGAGAAGAA 367509
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATG 50135
|||||| || || ||||| |||| | | |||| || || ||| | |||
Sbjct 367510 GATTCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGAGGCGTC--- 367566
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| | | ||||| | ||||| || || || | || || |||||||
Sbjct 367567 GATCCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATG 367626
Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255
||||||| | ||| ||| |||||| | || || |||| | ||| || |||||
Sbjct 367627 GAAGAGATGGGATTTCTCACAGGAATCTTTGATGTATGTTTCGAGAAGAAGGCTGTACAT 367686
Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315
|| || || |||||||| ||||| ||||||||||| ||||| | |||||| | |
Sbjct 367687 CTCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCCTCCGGGAG 367746
Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375
||| || || | || || | || | || || || ||||| ||| || ||
Sbjct 367747 CTGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCAGATGCAGC 367806
Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCA 50432
||| || || | || || | | || || |||| | || || || || |||
Sbjct 367807 AAAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGATTGATCCCA 367866
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
| | || |||| || | || ||||| || ||||||| || || || || || ||
Sbjct 367867 GTGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCTTCGGCTTT 367926
Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|| ||||| | |||||| | | |||| | || || || ||| || | | || ||
Sbjct 367927 CTTGTACATCTCCCAGATCTGAGGATAGCGTATCGGAAACATACAGAAGCGGTCGGGGTT 367986
Query 50553 TGGTGCAAGGATCGGTTC 50570
||| ||||| | ||| ||
Sbjct 367987 TGGGGCAAGAAGCGGCTC 368004
>seq2987
Length=13944
Score = 116 bits (128), Expect = 5e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|| || ||||| | || | ||| || | |||| | |||| |||||| |||| |||||||
Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|| ||||| ||||| || || ||| || |||||| ||||||||||||| || |||
Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| ||||| || || || || | ||| || ||||| |||||||| ||
Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861
Query 80275 CCCTCTATGCTATCATCAATCATG 80298
|| || ||||||||||| |||||
Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
||| || ||||| || | |||||| || || || ||||||||| | ||||| | |||
Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055
Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453
|| || | || || || || ||||| || || || || || | || | ||| ||
Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115
Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513
|||||||||||||||||| || | ||| | | |||||| | ||| ||| | || |
Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175
Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||||||||||||||||| | || ||| || || || || |||||
Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 79864 AACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCAC 79923
|| || ||||||||| ||| | || ||| || || | ||| || | || ||||||
Sbjct 530 AAATCATCTCCCCAACAATCAGCCAAACCAAGAGCCTCATTAGGGCAAAATAATGACCAC 589
Query 79924 TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 79983
||| ||| | || || | || ||| || ||||||||||||||||| || ||| |||
Sbjct 590 TCTTCATTACTCTGGACCCTTTCCATGAAAAGATCAGGAATCCAAAGGGCATAAAAAAGA 649
Query 79984 TCTCTGGTTCTATGCTCCTC 80003
||||||| |||||||||||
Sbjct 650 TCTCTGGCCCTATGCTCCTC 669
>seq40021
Length=871558
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | ||| || | |||| |||| | | |||||||| || ||
Sbjct 118230 TCCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCC 118171
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| || |||||| ||||| || || || ||| |||||||||| || || ||
Sbjct 118170 ATTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGA 118111
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| || ||||| || || ||| |||| || || |||||| |||||||| ||
Sbjct 118110 GACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATAT 118051
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
||||| ||||||||||| ||||| || || || |||||
Sbjct 118050 TCCCTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCT 118009
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
||| |||||||| || |||||||||||||| || |||||||| | |||| ||||
Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857
Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453
|| || | || || || || ||||| || |||||| |||| || || | ||| |
Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797
Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513
||| ||||| || ||||| || | || | || ||| | | || || | || |
Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTTAGAAGATAGGACCTCTCGAG 117737
Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct 117736 AGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717614259599280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |