Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq55201 147 3e-30 seq25504 141 1e-28 seq2987 116 5e-21 seq40021 98.7 1e-15 >seq55201 Length=1221137 Score = 147 bits (162), Expect = 3e-30 Identities = 388/584 (66%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||||| || |||||||| || | | || || |||||||| || ||||| Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| | || ||||| || ||||| || |||| |||| | | ||||| ||||| Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCAGAGAAGAA 301324 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCAT 50134 || ||||| || || || || | || | ||| || || | | || |||| Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGC-GTCA- 301266 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | ||||| | ||||| || || || || || || |||||| Sbjct 301265 --ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCAC 301208 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 ||| || | |||||| || ||||| | ||||| |||| | ||||||||||| Sbjct 301207 GAAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACA 301148 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 |||| || ||||||||||||||||| |||||||| |||||||| | |||||| | | Sbjct 301147 TTTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGA 301088 Query 50315 TCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 || ||||| | || ||||| | |||| || ||| || || || || || Sbjct 301087 GTTGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCG 301029 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT---TTATTC 50430 ||||| || || | || || | | || || |||| || || ||| | || | Sbjct 301028 GCAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCC 300969 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | | | |||| || | || || |||||| | ||||| || || |||||||| Sbjct 300968 CAGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCT 300909 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || || ||||| | |||||| | |||| |||| || || || Sbjct 300908 TTCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACAT 300865 >seq25504 Length=639989 Score = 141 bits (156), Expect = 1e-28 Identities = 405/618 (66%), Gaps = 11/618 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || || ||||||||||||||||| | | || || |||||||| || ||||| Sbjct 367391 CAAGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGA 367450 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 ||||||||||| || | ||| || ||||| || |||| | || || || || ||||| Sbjct 367451 CCGGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGG-CACAGAAGCTACCGGAGAAGAA 367509 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATG 50135 |||||| || || ||||| |||| | | |||| || || ||| | ||| Sbjct 367510 GATTCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGAGGCGTC--- 367566 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | | ||||| | ||||| || || || | || || ||||||| Sbjct 367567 GATCCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATG 367626 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||||| | ||| ||| |||||| | || || |||| | ||| || ||||| Sbjct 367627 GAAGAGATGGGATTTCTCACAGGAATCTTTGATGTATGTTTCGAGAAGAAGGCTGTACAT 367686 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || || |||||||| ||||| ||||||||||| ||||| | |||||| | | Sbjct 367687 CTCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCCTCCGGGAG 367746 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| || || | || || | || | || || || ||||| ||| || || Sbjct 367747 CTGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCAGATGCAGC 367806 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCA 50432 ||| || || | || || | | || || |||| | || || || || ||| Sbjct 367807 AAAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGATTGATCCCA 367866 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 | | || |||| || | || ||||| || ||||||| || || || || || || Sbjct 367867 GTGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCTTCGGCTTT 367926 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| | |||||| | | |||| | || || || ||| || | | || || Sbjct 367927 CTTGTACATCTCCCAGATCTGAGGATAGCGTATCGGAAACATACAGAAGCGGTCGGGGTT 367986 Query 50553 TGGTGCAAGGATCGGTTC 50570 ||| ||||| | ||| || Sbjct 367987 TGGGGCAAGAAGCGGCTC 368004 >seq2987 Length=13944 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | ||| || | |||| | |||| |||||| |||| ||||||| Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || ||| || |||||| ||||||||||||| || ||| Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || || || | ||| || ||||| |||||||| || Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || ||||||||||| ||||| Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | |||||| || || || ||||||||| | ||||| | ||| Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | || || || || ||||| || || || || || | || | ||| || Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||||||||| || | ||| | | |||||| | ||| ||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||||||||||||| | || ||| || || || || ||||| Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 79864 AACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCAC 79923 || || ||||||||| ||| | || ||| || || | ||| || | || |||||| Sbjct 530 AAATCATCTCCCCAACAATCAGCCAAACCAAGAGCCTCATTAGGGCAAAATAATGACCAC 589 Query 79924 TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 79983 ||| ||| | || || | || ||| || ||||||||||||||||| || ||| ||| Sbjct 590 TCTTCATTACTCTGGACCCTTTCCATGAAAAGATCAGGAATCCAAAGGGCATAAAAAAGA 649 Query 79984 TCTCTGGTTCTATGCTCCTC 80003 ||||||| ||||||||||| Sbjct 650 TCTCTGGCCCTATGCTCCTC 669 >seq40021 Length=871558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | |||| |||| | | |||||||| || || Sbjct 118230 TCCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCC 118171 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || |||||| ||||| || || || ||| |||||||||| || || || Sbjct 118170 ATTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGA 118111 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || ||||| || || ||| |||| || || |||||| |||||||| || Sbjct 118110 GACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATAT 118051 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| || || || ||||| Sbjct 118050 TCCCTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCT 118009 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| |||||||| || |||||||||||||| || |||||||| | |||| |||| Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | || || || || ||||| || |||||| |||| || || | ||| | Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||| ||||| || ||||| || | || | || ||| | | || || | || | Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTTAGAAGATAGGACCTCTCGAG 117737 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||||| ||||| || | || |||||||| || ||||| || Sbjct 117736 AGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717614259599280