Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq55201 127 3e-24 seq2987 111 2e-19 seq40021 96.9 5e-15 >seq55201 Length=1221137 Score = 127 bits (140), Expect = 3e-24 Identities = 233/339 (69%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||| || ||||||||||| | | || | |||||||| || ||||| Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| | || ||||| || ||||| || || | |||| | | | ||||| ||||| Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCAGAGAAGAA 301324 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || || || || | || | ||| || | || | | | || Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCAAT 301264 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | ||||| | ||||| || || || || || || |||||| ||| Sbjct 301263 CCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGAAA 301204 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || | |||||| || ||||| | || || |||| | ||||||||||||||| Sbjct 301203 AAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATTTC 301144 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || ||||||||||||||||| |||||||| |||||||| Sbjct 301143 GGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAA 301105 >seq2987 Length=13944 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | |||| | |||| |||||| |||| ||||||| Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||| || |||||| |||||||||||||| || ||| Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || || || | ||| || ||||| |||||||| || Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || || |||||||| ||||| Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | |||||| || || || ||||||||| | ||||| | ||| Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | || || || || ||||| || || || || || | || | ||| || Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||||||||| || | ||| | | |||||| | ||||||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||||||| | || ||| || || || || ||||| Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 || || ||||||||| || | || ||| || ||||| || || | ||||||||| Sbjct 530 AAATCATCTCCCCAACAATCAGCCAAACCAAGAGCCTCATTAGGGCAAAATAATGACCAC 589 Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 72066 ||| ||| | | || | || ||| || ||||||||||||||||| || ||| ||| Sbjct 590 TCTTCATTACTCTGGACCCTTTCCATGAAAAGATCAGGAATCCAAAGGGCATAAAAAAGA 649 Query 72067 TCTCTGGTTCTATGCTCCTC 72086 ||||||| ||||||||||| Sbjct 650 TCTCTGGCCCTATGCTCCTC 669 >seq40021 Length=871558 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| |||||||| || |||||||||||||| || |||||||| | |||| |||| Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | || || || || ||||| || ||| || |||| || || | ||| | Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||||||||| || ||||| || | || | || ||| | | ||||| | || | Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTTAGAAGATAGGACCTCTCGAG 117737 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||| ||||| || | || |||||||| || ||||| || Sbjct 117736 AGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670527607625520