Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq38797 86.0 6e-12 >seq38797 Length=1288649 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | | ||| | ||||| ||||| || || || || || ||||||||||| Sbjct 628761 CCTCCCCTCAGACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628702 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || ||||| || ||| ||||||| | ||||||||| ||||| Sbjct 628701 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGG 628642 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || || |||| | || | || |||| || || Sbjct 628641 ATGCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACC 628582 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 628581 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 628535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506552370452640