Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq55201 129 9e-25 seq25504 120 4e-22 >seq55201 Length=1221137 Score = 129 bits (142), Expect = 9e-25 Identities = 389/585 (66%), Gaps = 17/585 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| | |||| | || ||||| |||||||| || || |||| ||||| | Sbjct 300866 TGTTTCCGATCCGCTATCCGCAGATCTGGGAGATGTACAAGAAAGCAGAGGCTTCCTTCT 300925 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG-ACTCGTTTGACT 125114 |||| | ||||||||||| || || | |||||| | ||||| || | || || Sbjct 300926 GGACTGCGGAAGAGGTCGACCTCTCACAAGACCTGCGTCACTGGGATCACACACTTACCT 300985 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || | | ||| | | ||||||||||||| || ||||| ||| Sbjct 300986 CCGAC-GAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTTGCCGCTTCAGATGGTATC 301044 Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGT 125232 ||| || || || | | | |||||| | || ||| | | | || |||| ||| Sbjct 301045 GTCCTTGAGAACCTAGCCGGC-CGATTCATGCGCGAAGTTCAAC-TCCCGGAGGC-TCGC 301101 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| || || ||| ||||| ||| | ||||| |||||||| | || Sbjct 301102 GCATTCTACGGCTTTCAGATCGCCATTGAAAACATTCACTCCGAAATGTATAGTCTTCTC 301161 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACA--CATGCTCTTTAACGCAATCGACA 125349 | || | ||||| || | ||| | ||| | | | || ||| || ||||| | Sbjct 301162 CTCGAGACTTACATCAAAGA--CTCAAAGGAAAAATCCCTCCTTTTTCGTGCCATCGAGA 301219 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | | |||||||| |||| | | || ||||| ||||| | Sbjct 301220 CCATCCCCTGCGTCGCTCGCAAGGCTCAGTGGGCGCTGCGCTGGAT---TGACGCCTCTG 301276 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 | | | || || | | | || ||||| ||| || || || ||||| || || | Sbjct 301277 ATACATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCA 301336 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 | || |||| ||||||| ||||||||||||||||| | |||||||| || || | Sbjct 301337 GCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCC 301395 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | |||||||| || ||||| || || || ||||||||| Sbjct 301396 AACGAGCTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGCC 301440 >seq25504 Length=639989 Score = 120 bits (132), Expect = 4e-22 Identities = 382/581 (66%), Gaps = 11/581 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| || | |||| | | || ||||| |||||||| || || | |||||||| | Sbjct 367967 TGTTTCCGATACGCTATCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 367908 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG-ACTCGTTTGACT 125114 |||| | || || ||||| || ||| | ||||| | ||||| | || | || Sbjct 367907 GGACAGCAGAGGAAGTCGACCTCTCCCAAGACCTCCGTCACTGGGATCAATCCCTCACCT 367848 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || | | ||| || | ||||||||||| | || ||||||||| Sbjct 367847 CTGAC-GAGCGCCACTTCGTCACCCACGTTCTCGCCTTCTTTGCTGCATCTGATGGAATC 367789 Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 ||| ||| || || | | | || ||| ||| | | || |||| ||| | Sbjct 367788 GTCCTCGAGAACCTTGCCGGC-CGCTTCATGAGGGAGGTACAGCTCCCGGAGGC-TCGCG 367731 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || ||||| || || || || ||| | ||||| || |||||| || Sbjct 367730 CCTTCTATGGATTTCAGATTGCCATCGAAAACATCCACTCCGAGATGTACAGCCTTCTTC 367671 Query 125293 TTGACATGTACATTCGCGAT-CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| ||| || | || | ||| ||||| | || ||||| || Sbjct 367670 TCGAAACATACATCAAAGATTCCTGTGAGAAATCCCAT-CTCTTCCATGCCATCGAGACC 367612 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | | |||||||| |||| | || |||||||| | | ||| | Sbjct 367611 GTCCCCTGCGTCGCCCGCAAGGCTCAGTGGGCCCTACGTTGGATCGACGCCTCCAA---T 367555 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 || | || || | | | || || || ||| ||||| |||||||| || ||||| Sbjct 367554 TCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGC 367495 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || |||||||| |||||||||||| | || || |||||||| || || | ||| Sbjct 367494 TTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAAC 367435 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| | |||||||| |||||||| || |||||||||||||| Sbjct 367434 GAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGC 367394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740383891277520