Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq41242 89.7 4e-13 >seq41242 Length=195047 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||||||||||||||| || || | || | | ||||| |||||||| || Sbjct 146699 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 146758 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| ||||||||||| || | |||||||||||| || || || Sbjct 146759 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 146818 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| |||| ||| | || ||||| || || || | ||| Sbjct 146819 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 146878 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 146879 TTCACAAAAATCTGCAT 146895 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||||||||||||||| || || | || | | ||||| |||||||| || Sbjct 151863 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 151922 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| ||||||||||| || | |||||||||||| || || || Sbjct 151923 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 151982 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| |||| ||| | || ||||| || || || | ||| Sbjct 151983 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 152042 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 152043 TTCACAAAAATCTGCAT 152059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414204454917388