Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq40947 89.7 4e-13 seq41242 84.2 2e-11 >seq40947 Length=4604 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| || || ||||| |||| | ||| | ||||| |||||| Sbjct 1655 TGAAGGGTGGATTCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCATCCTCAAGCTGC 1596 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || | |||| | ||||| ||| | | | |||||||||| || ||| Sbjct 1595 TTACCGGCGAAGATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTGTCCTGGATCTTC 1536 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| |||| |||| ||||| ||| ||||| || || ||| Sbjct 1535 GACTTCACGTTCTCAATGGTGTCGGAGCTCTCCACCTCGAGTGTAATGGTCTTGCCTGTG 1476 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||| ||||||||| Sbjct 1475 AGGGTTTTGACAAAGATCTGCATC 1452 >seq41242 Length=195047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||| ||||| || ||||||||||||||||| || |||| || |||||||| Sbjct 171179 ACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCC 171238 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || || | ||||| || || | | ||||||||| Sbjct 171239 AGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 171298 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||| | | | |||||||| | |||| ||| | || |||||||| Sbjct 171299 ATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTTTTT 171358 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || ||||| |||||||| Sbjct 171359 CCAGTGAGGGTCTTGACAAAGATCTGCAT 171387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420876921204902