Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq40947 89.7 4e-13
seq41242 84.2 2e-11
>seq40947
Length=4604
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||||| || || ||||| |||| | ||| | ||||| ||||||
Sbjct 1655 TGAAGGGTGGATTCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCATCCTCAAGCTGC 1596
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|||||| || | |||| | ||||| ||| | | | |||||||||| || |||
Sbjct 1595 TTACCGGCGAAGATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTGTCCTGGATCTTC 1536
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | ||||| |||| |||| ||||| ||| ||||| || || |||
Sbjct 1535 GACTTCACGTTCTCAATGGTGTCGGAGCTCTCCACCTCGAGTGTAATGGTCTTGCCTGTG 1476
Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727
|| ||||| ||||| |||||||||
Sbjct 1475 AGGGTTTTGACAAAGATCTGCATC 1452
>seq41242
Length=195047
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|||| ||||| || ||||||||||||||||| || |||| || ||||||||
Sbjct 171179 ACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCC 171238
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|||||||| ||| | | || || | ||||| || || | | |||||||||
Sbjct 171239 AGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 171298
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
||||| ||| | | | |||||||| | |||| ||| | || ||||||||
Sbjct 171299 ATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTTTTT 171358
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || || ||||| ||||||||
Sbjct 171359 CCAGTGAGGGTCTTGACAAAGATCTGCAT 171387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420876921204902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |