Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq58278 107 1e-18
seq29327 107 1e-18
seq14954 107 1e-18
seq10871 105 3e-18
>seq58278
Length=228579
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 109361 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 109302
Query 11515 CTGAGCTAATGGGCCGTC 11532
|||||||||| |||| ||
Sbjct 109301 CTGAGCTAATAGGCCATC 109284
>seq29327
Length=470017
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 439231 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 439172
Query 11515 CTGAGCTAATGGGCCGTC 11532
|||||||||| |||| ||
Sbjct 439171 CTGAGCTAATAGGCCATC 439154
>seq14954
Length=1253609
Score = 107 bits (118), Expect = 1e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1010887 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1010946
Query 11516 TGAGCTAATGGGCCGT 11531
||||||||| ||||||
Sbjct 1010947 TGAGCTAATAGGCCGT 1010962
>seq10871
Length=1511892
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 588399 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 588340
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 588339 CTGAGCTAATAGGCC 588325
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1451438 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1451497
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 1451498 CTGAGCTAATAGGCC 1451512
Lambda K H
0.640 0.410 0.922
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261258866866552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |