Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq72318 172 9e-39
seq38714 165 1e-36
seq20579 158 2e-34
seq70024 149 1e-31
seq69639 145 1e-30
seq44112 136 6e-28
seq69574 131 3e-26
seq39742 129 9e-26
seq27139 129 9e-26
seq2659 113 7e-21
>seq72318
Length=78808
Score = 172 bits (190), Expect = 9e-39
Identities = 194/260 (75%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| ||| ||||| | |||||| |||||||| ||||| || |||
Sbjct 21372 GCGAAGCGCCACCGCAAGGTTCTCCGAGACATCATCCAGGGAATCACGAAGCCGGCGATC 21431
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||| | |||||||| |||||||| || | | ||| |||| || ||||
Sbjct 21432 CGGCGGCTGGCAAGACGTGGTGGCGTCAAGCGGATCAGTAGTTTGATCTACGAGGAGACC 21491
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| |||||||||| || ||| ||||||| |||||| || |||||| |||
Sbjct 21492 CGTGGCGTTCTGAAGATCTTTCTTGAGAATGTTATCCGTGATGCCGTCACCTATACGGAG 21551
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| || ||||||||||| ||||||| | |||||||| | || || || ||
Sbjct 21552 CATGCTCGCCGGAAGACTGTCACAGCCATGGACGTAGTCTATGCGCTCAAGCGCCAGGGG 21611
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|||| ||||||| |||||
Sbjct 21612 CGTACTCTTTATGGCTTTGG 21631
>seq38714
Length=79624
Score = 165 bits (182), Expect = 1e-36
Identities = 184/246 (75%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| || ||||||||||| ||||| |||||||| ||||| || || ||||| |||||
Sbjct 4339 TCTTCGCGACAACATCCAAGGCATCACAAAGCCAGCAATCCGGCGACTTGCTCGGCGTGG 4280
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||||| ||||| || ||| ||| |||| || |||| | | || | ||||| ||
Sbjct 4279 AGGAGTTAAGCGGATCAGTGGCTTGATCTACGAGGAGACCAGAGGCGTGCTCAAGATATT 4220
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| ||| ||||||| |||||| | |||||||||||||||| || ||||| ||
Sbjct 4219 TCTCGAGAATGTTATCCGTGATGCCGTTACCTATACCGAGCACGCTCGCCGGAAGACGGT 4160
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||||| | |||||||| |||| || || ||||||| ||||||| |||||
Sbjct 4159 GACTGCTATGGACGTTGTCTATGCTCTGAAGCGCCAGGGCCGTACCCTTTATGGCTTTGG 4100
Query 16693 AAGTTA 16698
||||
Sbjct 4099 TGGTTA 4094
Score = 147 bits (162), Expect = 3e-31
Identities = 180/246 (73%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| || ||||||||||| || || |||||||| ||||| || || ||||| |||||
Sbjct 6642 TCTTCGCGACAACATCCAAGGCATTACAAAGCCAGCAATCCGGCGACTTGCTCGGCGTGG 6583
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||||| ||||| || || ||| | || || |||| | | || | ||||| ||
Sbjct 6582 AGGAGTTAAGCGGATCAGCGGCTTGATATACGAGGAGACCAGAGGCGTGCTCAAGATATT 6523
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
|| ||| ||||||| |||||| | |||||||||||||||| || ||||| ||
Sbjct 6522 TCTTGAGAATGTTATCCGTGATGCCGTTACCTATACCGAGCACGCTCGCCGGAAGACGGT 6463
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||||| | |||||||| |||| || || ||||||| ||||||| |||||
Sbjct 6462 GACTGCTATGGACGTTGTCTATGCTCTGAAGCGCCAGGGCCGTACCCTTTATGGCTTTGG 6403
Query 16693 AAGTTA 16698
||||
Sbjct 6402 TGGTTA 6397
>seq20579
Length=319166
Score = 158 bits (174), Expect = 2e-34
Identities = 191/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| | |||| | ||| ||||| |||||||| ||||| || |||||||| |||
Sbjct 80341 GCTAAGCGCCGCCGCAAAGTTCTCCGAGACAACATCCAGGGAATAACAAAGCCAGCGATC 80282
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||| | ||||| || || |||| || ||| ||| ||||||| |||| |
Sbjct 80281 CGGCGGTTGGCAAGGCGTGGCGGCGTGAAGCCGATCAGTGGTTTGATCTATGAGGAGACT 80222
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
||| || |||||||||| || ||| |||||| ||||||| || |||||| |||
Sbjct 80221 TGTGGCATTCTGAAGATCTTTCTTGAGAATGTTATCTGTGATGCTGTCACCTATACGGAG 80162
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| || ||||||||||| ||||||| | ||||| ||| | || || || ||
Sbjct 80161 CATGCTCGCCGGAAGACTGTCACAGCCATGGACGTAGTCTACGCACTCAAGCGCCAGGGG 80102
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| ||||||| |||||
Sbjct 80101 GGTTCTCTTTATGGCTTTGG 80082
>seq70024
Length=358366
Score = 149 bits (164), Expect = 1e-31
Identities = 189/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| ||| ||||| || ||||| |||||||| ||| | || |||
Sbjct 246800 GCGAAGCGCCACCGCAAGGTTCTCCGAGACAATATCCAGGGAATCACGAAGTCGGCGATC 246741
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| | | || | |||| || ||||||| || ||| ||| |||| || ||||
Sbjct 246740 CGGTGGCCGGTAAGGTGTGGCGGCGTCAAGCAGATCAGTGGTTTGATCTACGAGGAGACC 246681
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| || ||| |||||||||| || ||| ||||| |||||||| || |||||| |||
Sbjct 246680 CGCGACGTTCTGAAGATCTTTCTTGAGAATGTTATTCATGATGCCGTCACCTATACGGAG 246621
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| || ||||||||||| ||||||| | ||||||||| | || || || ||
Sbjct 246620 CATGCTCGCCGGAAGACTGTCACAGCCATGGACGTAGTCTATGCACTCAAGCGCCAGGGG 246561
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|||| ||||||| |||||
Sbjct 246560 CGTACCCTTTATGGCTTTGG 246541
>seq69639
Length=243267
Score = 145 bits (160), Expect = 1e-30
Identities = 196/273 (72%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || || | ||| || || ||||| || || || || |||||||||||
Sbjct 85616 GCTAAGCGCCACCGAAAGGTTCTCCGCGACAACATTCAGGGCATTACTAAGCCAGCTATT 85675
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || ||||| |||||||| || ||||| | || || ||||||| ||||
Sbjct 85676 CGCCGCCTAGCTCGCCGTGGTGGGGTTAAGCGCATAAGCGGTCTGATCTATGAGGAGACA 85735
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || |||||||||| ||| ||| |||||| | ||||||| | ||||| ||
Sbjct 85736 CGAGGAGTGCTGAAGATCTTTCTCGAGAACGTTATTCGTGATGCTGTAACGTATACTGAA 85795
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| |||||||| || ||| ||||||| | || || || | || || || ||
Sbjct 85796 CATGCTCGCCGTAAGACCGTGACCGCCATGGACGTTGTGTACGCTCTCAAGCGCCAGGGT 85855
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
|||| ||||||| |||||| ||| || ||||
Sbjct 85856 CGTACTCTTTATGGATTTGGAGGTTGATTTTCT 85888
>seq44112
Length=396401
Score = 136 bits (150), Expect = 6e-28
Identities = 186/260 (72%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| | ||| ||||| ||||| || ||||| | ||||| | |||
Sbjct 360227 GCGAAGCGCCACCGCAAAGTTCTCCGAGACAACATTCAGGGAATTGCGAAGCCGGTGATC 360286
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || | | ||||| | || || || || ||| ||| |||| || ||||
Sbjct 360287 CGGCGGTTGCCAAGGCGTGGCGACGTTAAACGGATCAGTGGTTTGATCTACGAGGAGACC 360346
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| |||||||||| || ||| ||||||||||||||| || |||||| |||
Sbjct 360347 CGTGGCGTTCTGAAGATCTTTCTTGAGAATGTTATCCATGATGCTGTCGCCTATACGGAG 360406
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| | ||||||||||| ||||||| | ||||| || | || || || ||
Sbjct 360407 CATGCTCGCTGGAAGACTGTCACAACCATGGACGTAGTCTACGCGCTCAAGCGCCAGGGG 360466
Query 16673 CGTAAGATTTATGGTTTTGG 16692
| || ||||||| |||||
Sbjct 360467 CATACTCTTTATGGCTTTGG 360486
>seq69574
Length=784306
Score = 131 bits (144), Expect = 3e-26
Identities = 173/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||| || || || ||||| |||||||||||||| || || || || || ||||| || ||
Sbjct 491591 TCTCCGTGACAATATCCAGGGAATCACCAAGCCGGCGATTCGCCGGCTTGCTCGCCGAGG 491650
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || ||||| | || | |||||||||| | || | ||| | ||||| ||
Sbjct 491651 TGGTGTAAAGCGAATTAGCGGCCTCATCTATGAAGAAACCCGCGGCGTTCTCAAGATATT 491710
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
|| ||| ||||||| ||||||| | ||| || |||||||| |||||||| ||
Sbjct 491711 TCTTGAGAATGTTATCCGTGATGCTGTGACCTACACGGAGCACGCCCGCCGTAAGACCGT 491770
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|||| ||||||| | || ||||| | || || || || || | |||||||||||||
Sbjct 491771 CACCGCCATGGACGTTGTTTATGCGCTCAAGCGCCAGGGTCGCACTCTTTATGGTTTTGG 491830
>seq39742
Length=1877953
Score = 129 bits (142), Expect = 9e-26
Identities = 188/266 (71%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| ||| ||||| || ||||| || || || ||||| || ||
Sbjct 988127 GCAAAGCGCCACCGCAAGGTTCTCCGAGACAATATCCAGGGTATTACTAAGCCGGCGATT 988186
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || ||||| || || || |||||||| || ||| || ||||||| ||||
Sbjct 988187 CGCCGCCTTGCTCGCCGCGGCGGCGTCAAGCGAATCAGTGGCCTGATCTATGAGGAGACG 988246
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | |||||||| || ||| ||| |||| ||||| | ||| |||||
Sbjct 988247 CGAGGCGTCCTTAAGATCTTTCTTGAGAACGTCATCCGCGATGCGGTGACCTACACCGAA 988306
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||| ||||| | |||||| | || ||||| | || ||||| ||
Sbjct 988307 CACGCTCGCCGGAAGACCGTCACTGCTATGGATGTTGTGTATGCTCTCAAGCGTCAGGGT 988366
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698
|| | | ||||||||||| ||||
Sbjct 988367 CGCACCCTCTATGGTTTTGGTGGTTA 988392
>seq27139
Length=2592673
Score = 129 bits (142), Expect = 9e-26
Identities = 188/266 (71%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| ||| ||||| || ||||| || || || ||||| || ||
Sbjct 1977429 GCGAAGCGCCACCGCAAGGTTCTCCGAGACAATATCCAGGGTATTACTAAGCCGGCGATT 1977370
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || ||||| || || || |||||||| || ||| || ||||||| ||||
Sbjct 1977369 CGCCGCCTTGCTCGCCGCGGCGGCGTCAAGCGAATCAGTGGCCTGATCTATGAGGAGACG 1977310
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | |||||||| || ||| ||| |||| ||||| | ||| |||||
Sbjct 1977309 CGAGGCGTCCTTAAGATCTTTCTTGAGAACGTCATCCGCGATGCGGTGACCTACACCGAA 1977250
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||| ||||| | |||||| | || ||||| | || ||||| ||
Sbjct 1977249 CACGCTCGCCGGAAGACCGTCACTGCTATGGATGTTGTGTATGCTCTCAAGCGTCAGGGT 1977190
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698
|| | | ||||||||||| ||||
Sbjct 1977189 CGCACCCTCTATGGTTTTGGTGGTTA 1977164
Score = 125 bits (138), Expect = 1e-24
Identities = 189/269 (70%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | || || || |||||||| || || || ||||| || |||
Sbjct 2277452 GCGAAGCGTCATCGGAAGGTGCTCCGCGACAACATCCAGGGCATAACGAAGCCGGCCATC 2277393
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| ||||| |||||||| || ||||| || ||| | |||| || || | |
Sbjct 2277392 CGCCGTCTTGCTCGCCGTGGTGGCGTGAAGCGCATCAGTGGCCTAATCTACGAGGAAACT 2277333
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | |||||||| || ||| || |||| |||||| | |||||| |||
Sbjct 2277332 CGTGGGGTGCTCAAGATCTTTCTTGAGAATGTCATCCGCGATGCTGTAACCTATACTGAG 2277273
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || |||||||| || ||||||| | || || || | || || || ||
Sbjct 2277272 CACGCTCGCCGGAAGACTGTTACTGCCATGGACGTTGTGTACGCCCTCAAGCGCCAGGGG 2277213
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATC 16701
|| | | || || |||||| | | |||
Sbjct 2277212 CGAACTCTCTACGGATTTGGAGGCTGATC 2277184
>seq2659
Length=477509
Score = 113 bits (124), Expect = 7e-21
Identities = 185/267 (69%), Gaps = 5/267 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| | | ||||| || ||||| || || || | |||||| ||
Sbjct 371250 GCGAAGCGCCACCGCAAGGTTGTCCGAGACAATATCCAGGGCATAACTAGGCCAGCGATT 371309
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || ||||| || || || |||||||| || ||| || ||||||| ||||
Sbjct 371310 CGCCGCCTTGCTCGCCGCGGCGGCGTCAAGCGAATCAGTGGCCTGATCTATGAGGAGACG 371369
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | |||||||| || ||| ||| |||| ||||| | ||| |||||
Sbjct 371370 CGAGGCGTCCTTAAGATCTTTCTTGAGAACGTCATCCGCGATGCGGTAACCTACACCGAA 371429
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||| ||||| ||||| | || ||| | | || ||||| ||
Sbjct 371430 CACGCTCGCCGGAAGACCGTCAC-----TGGATGTTGTGTATTCTCTCAAGCGTCAGGGT 371484
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | ||||||||||| |||||
Sbjct 371485 CGCACCCTCTATGGTTTTGGTGGTTAA 371511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79008545191086
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