Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq72318 172 9e-39 seq38714 165 1e-36 seq20579 158 2e-34 seq70024 149 1e-31 seq69639 145 1e-30 seq44112 136 6e-28 seq69574 131 3e-26 seq39742 129 9e-26 seq27139 129 9e-26 seq2659 113 7e-21 >seq72318 Length=78808 Score = 172 bits (190), Expect = 9e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| ||||| | |||||| |||||||| ||||| || ||| Sbjct 21372 GCGAAGCGCCACCGCAAGGTTCTCCGAGACATCATCCAGGGAATCACGAAGCCGGCGATC 21431 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| | |||||||| |||||||| || | | ||| |||| || |||| Sbjct 21432 CGGCGGCTGGCAAGACGTGGTGGCGTCAAGCGGATCAGTAGTTTGATCTACGAGGAGACC 21491 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||||||| || ||| ||||||| |||||| || |||||| ||| Sbjct 21492 CGTGGCGTTCTGAAGATCTTTCTTGAGAATGTTATCCGTGATGCCGTCACCTATACGGAG 21551 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || ||||||||||| ||||||| | |||||||| | || || || || Sbjct 21552 CATGCTCGCCGGAAGACTGTCACAGCCATGGACGTAGTCTATGCGCTCAAGCGCCAGGGG 21611 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||| Sbjct 21612 CGTACTCTTTATGGCTTTGG 21631 >seq38714 Length=79624 Score = 165 bits (182), Expect = 1e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| ||||| |||||||| ||||| || || ||||| ||||| Sbjct 4339 TCTTCGCGACAACATCCAAGGCATCACAAAGCCAGCAATCCGGCGACTTGCTCGGCGTGG 4280 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| ||||| || ||| ||| |||| || |||| | | || | ||||| || Sbjct 4279 AGGAGTTAAGCGGATCAGTGGCTTGATCTACGAGGAGACCAGAGGCGTGCTCAAGATATT 4220 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||||||| |||||| | |||||||||||||||| || ||||| || Sbjct 4219 TCTCGAGAATGTTATCCGTGATGCCGTTACCTATACCGAGCACGCTCGCCGGAAGACGGT 4160 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | |||||||| |||| || || ||||||| ||||||| ||||| Sbjct 4159 GACTGCTATGGACGTTGTCTATGCTCTGAAGCGCCAGGGCCGTACCCTTTATGGCTTTGG 4100 Query 16693 AAGTTA 16698 |||| Sbjct 4099 TGGTTA 4094 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| || || |||||||| ||||| || || ||||| ||||| Sbjct 6642 TCTTCGCGACAACATCCAAGGCATTACAAAGCCAGCAATCCGGCGACTTGCTCGGCGTGG 6583 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| ||||| || || ||| | || || |||| | | || | ||||| || Sbjct 6582 AGGAGTTAAGCGGATCAGCGGCTTGATATACGAGGAGACCAGAGGCGTGCTCAAGATATT 6523 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||||||| |||||| | |||||||||||||||| || ||||| || Sbjct 6522 TCTTGAGAATGTTATCCGTGATGCCGTTACCTATACCGAGCACGCTCGCCGGAAGACGGT 6463 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | |||||||| |||| || || ||||||| ||||||| ||||| Sbjct 6462 GACTGCTATGGACGTTGTCTATGCTCTGAAGCGCCAGGGCCGTACCCTTTATGGCTTTGG 6403 Query 16693 AAGTTA 16698 |||| Sbjct 6402 TGGTTA 6397 >seq20579 Length=319166 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| | |||| | ||| ||||| |||||||| ||||| || |||||||| ||| Sbjct 80341 GCTAAGCGCCGCCGCAAAGTTCTCCGAGACAACATCCAGGGAATAACAAAGCCAGCGATC 80282 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||| | ||||| || || |||| || ||| ||| ||||||| |||| | Sbjct 80281 CGGCGGTTGGCAAGGCGTGGCGGCGTGAAGCCGATCAGTGGTTTGATCTATGAGGAGACT 80222 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||| || |||||||||| || ||| |||||| ||||||| || |||||| ||| Sbjct 80221 TGTGGCATTCTGAAGATCTTTCTTGAGAATGTTATCTGTGATGCTGTCACCTATACGGAG 80162 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || ||||||||||| ||||||| | ||||| ||| | || || || || Sbjct 80161 CATGCTCGCCGGAAGACTGTCACAGCCATGGACGTAGTCTACGCACTCAAGCGCCAGGGG 80102 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||| Sbjct 80101 GGTTCTCTTTATGGCTTTGG 80082 >seq70024 Length=358366 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| ||||| || ||||| |||||||| ||| | || ||| Sbjct 246800 GCGAAGCGCCACCGCAAGGTTCTCCGAGACAATATCCAGGGAATCACGAAGTCGGCGATC 246741 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | | || | |||| || ||||||| || ||| ||| |||| || |||| Sbjct 246740 CGGTGGCCGGTAAGGTGTGGCGGCGTCAAGCAGATCAGTGGTTTGATCTACGAGGAGACC 246681 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || ||| |||||||||| || ||| ||||| |||||||| || |||||| ||| Sbjct 246680 CGCGACGTTCTGAAGATCTTTCTTGAGAATGTTATTCATGATGCCGTCACCTATACGGAG 246621 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || ||||||||||| ||||||| | ||||||||| | || || || || Sbjct 246620 CATGCTCGCCGGAAGACTGTCACAGCCATGGACGTAGTCTATGCACTCAAGCGCCAGGGG 246561 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||| Sbjct 246560 CGTACCCTTTATGGCTTTGG 246541 >seq69639 Length=243267 Score = 145 bits (160), Expect = 1e-30 Identities = 196/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | ||| || || ||||| || || || || ||||||||||| Sbjct 85616 GCTAAGCGCCACCGAAAGGTTCTCCGCGACAACATTCAGGGCATTACTAAGCCAGCTATT 85675 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| |||||||| || ||||| | || || ||||||| |||| Sbjct 85676 CGCCGCCTAGCTCGCCGTGGTGGGGTTAAGCGCATAAGCGGTCTGATCTATGAGGAGACA 85735 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||||||| ||| ||| |||||| | ||||||| | ||||| || Sbjct 85736 CGAGGAGTGCTGAAGATCTTTCTCGAGAACGTTATTCGTGATGCTGTAACGTATACTGAA 85795 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| |||||||| || ||| ||||||| | || || || | || || || || Sbjct 85796 CATGCTCGCCGTAAGACCGTGACCGCCATGGACGTTGTGTACGCTCTCAAGCGCCAGGGT 85855 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 |||| ||||||| |||||| ||| || |||| Sbjct 85856 CGTACTCTTTATGGATTTGGAGGTTGATTTTCT 85888 >seq44112 Length=396401 Score = 136 bits (150), Expect = 6e-28 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | ||| ||||| ||||| || ||||| | ||||| | ||| Sbjct 360227 GCGAAGCGCCACCGCAAAGTTCTCCGAGACAACATTCAGGGAATTGCGAAGCCGGTGATC 360286 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || | | ||||| | || || || || ||| ||| |||| || |||| Sbjct 360287 CGGCGGTTGCCAAGGCGTGGCGACGTTAAACGGATCAGTGGTTTGATCTACGAGGAGACC 360346 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||||||| || ||| ||||||||||||||| || |||||| ||| Sbjct 360347 CGTGGCGTTCTGAAGATCTTTCTTGAGAATGTTATCCATGATGCTGTCGCCTATACGGAG 360406 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| | ||||||||||| ||||||| | ||||| || | || || || || Sbjct 360407 CATGCTCGCTGGAAGACTGTCACAACCATGGACGTAGTCTACGCGCTCAAGCGCCAGGGG 360466 Query 16673 CGTAAGATTTATGGTTTTGG 16692 | || ||||||| ||||| Sbjct 360467 CATACTCTTTATGGCTTTGG 360486 >seq69574 Length=784306 Score = 131 bits (144), Expect = 3e-26 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || || ||||| |||||||||||||| || || || || || ||||| || || Sbjct 491591 TCTCCGTGACAATATCCAGGGAATCACCAAGCCGGCGATTCGCCGGCTTGCTCGCCGAGG 491650 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||||| | || | |||||||||| | || | ||| | ||||| || Sbjct 491651 TGGTGTAAAGCGAATTAGCGGCCTCATCTATGAAGAAACCCGCGGCGTTCTCAAGATATT 491710 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||||||| ||||||| | ||| || |||||||| |||||||| || Sbjct 491711 TCTTGAGAATGTTATCCGTGATGCTGTGACCTACACGGAGCACGCCCGCCGTAAGACCGT 491770 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| | || ||||| | || || || || || | ||||||||||||| Sbjct 491771 CACCGCCATGGACGTTGTTTATGCGCTCAAGCGCCAGGGTCGCACTCTTTATGGTTTTGG 491830 >seq39742 Length=1877953 Score = 129 bits (142), Expect = 9e-26 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| ||||| || ||||| || || || ||||| || || Sbjct 988127 GCAAAGCGCCACCGCAAGGTTCTCCGAGACAATATCCAGGGTATTACTAAGCCGGCGATT 988186 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || |||||||| || ||| || ||||||| |||| Sbjct 988187 CGCCGCCTTGCTCGCCGCGGCGGCGTCAAGCGAATCAGTGGCCTGATCTATGAGGAGACG 988246 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||| || ||| ||| |||| ||||| | ||| ||||| Sbjct 988247 CGAGGCGTCCTTAAGATCTTTCTTGAGAACGTCATCCGCGATGCGGTGACCTACACCGAA 988306 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| | |||||| | || ||||| | || ||||| || Sbjct 988307 CACGCTCGCCGGAAGACCGTCACTGCTATGGATGTTGTGTATGCTCTCAAGCGTCAGGGT 988366 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | ||||||||||| |||| Sbjct 988367 CGCACCCTCTATGGTTTTGGTGGTTA 988392 >seq27139 Length=2592673 Score = 129 bits (142), Expect = 9e-26 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| ||||| || ||||| || || || ||||| || || Sbjct 1977429 GCGAAGCGCCACCGCAAGGTTCTCCGAGACAATATCCAGGGTATTACTAAGCCGGCGATT 1977370 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || |||||||| || ||| || ||||||| |||| Sbjct 1977369 CGCCGCCTTGCTCGCCGCGGCGGCGTCAAGCGAATCAGTGGCCTGATCTATGAGGAGACG 1977310 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||| || ||| ||| |||| ||||| | ||| ||||| Sbjct 1977309 CGAGGCGTCCTTAAGATCTTTCTTGAGAACGTCATCCGCGATGCGGTGACCTACACCGAA 1977250 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| | |||||| | || ||||| | || ||||| || Sbjct 1977249 CACGCTCGCCGGAAGACCGTCACTGCTATGGATGTTGTGTATGCTCTCAAGCGTCAGGGT 1977190 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | ||||||||||| |||| Sbjct 1977189 CGCACCCTCTATGGTTTTGGTGGTTA 1977164 Score = 125 bits (138), Expect = 1e-24 Identities = 189/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | || || || |||||||| || || || ||||| || ||| Sbjct 2277452 GCGAAGCGTCATCGGAAGGTGCTCCGCGACAACATCCAGGGCATAACGAAGCCGGCCATC 2277393 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| || ||||| || ||| | |||| || || | | Sbjct 2277392 CGCCGTCTTGCTCGCCGTGGTGGCGTGAAGCGCATCAGTGGCCTAATCTACGAGGAAACT 2277333 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||| || ||| || |||| |||||| | |||||| ||| Sbjct 2277332 CGTGGGGTGCTCAAGATCTTTCTTGAGAATGTCATCCGCGATGCTGTAACCTATACTGAG 2277273 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||| || ||||||| | || || || | || || || || Sbjct 2277272 CACGCTCGCCGGAAGACTGTTACTGCCATGGACGTTGTGTACGCCCTCAAGCGCCAGGGG 2277213 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATC 16701 || | | || || |||||| | | ||| Sbjct 2277212 CGAACTCTCTACGGATTTGGAGGCTGATC 2277184 >seq2659 Length=477509 Score = 113 bits (124), Expect = 7e-21 Identities = 185/267 (69%), Gaps = 5/267 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | | ||||| || ||||| || || || | |||||| || Sbjct 371250 GCGAAGCGCCACCGCAAGGTTGTCCGAGACAATATCCAGGGCATAACTAGGCCAGCGATT 371309 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || |||||||| || ||| || ||||||| |||| Sbjct 371310 CGCCGCCTTGCTCGCCGCGGCGGCGTCAAGCGAATCAGTGGCCTGATCTATGAGGAGACG 371369 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||| || ||| ||| |||| ||||| | ||| ||||| Sbjct 371370 CGAGGCGTCCTTAAGATCTTTCTTGAGAACGTCATCCGCGATGCGGTAACCTACACCGAA 371429 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| ||||| | || ||| | | || ||||| || Sbjct 371430 CACGCTCGCCGGAAGACCGTCAC-----TGGATGTTGTGTATTCTCTCAAGCGTCAGGGT 371484 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||||||| ||||| Sbjct 371485 CGCACCCTCTATGGTTTTGGTGGTTAA 371511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79008545191086