Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq25504 145 9e-30 seq55201 138 1e-27 seq2987 107 2e-18 seq40021 95.1 2e-14 >seq25504 Length=639989 Score = 145 bits (160), Expect = 9e-30 Identities = 398/608 (65%), Gaps = 9/608 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || || ||||||||||||||||| | | || || |||||||| || ||||| Sbjct 367391 CAAGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGA 367450 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 ||||||||||| || | ||| || ||||| || |||| | ||| || || |||||| Sbjct 367451 CCGGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAG 367510 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33480 ||||| || || |||||| |||| | | |||| || || || | ||| Sbjct 367511 ATTCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGAGGCGTC---G 367567 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | | ||||| | ||||| || || || | || || ||||||| Sbjct 367568 ATCCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGG 367627 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||||| | ||| ||| |||||| | || || |||| | ||| || ||||| Sbjct 367628 AAGAGATGGGATTTCTCACAGGAATCTTTGATGTATGTTTCGAGAAGAAGGCTGTACATC 367687 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || |||||||| ||||| ||||||||||| ||||| | |||||| | | | Sbjct 367688 TCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCCTCCGGGAGC 367747 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 ||||| || | || || | || | || || || ||||| ||| || ||| Sbjct 367748 TGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCAGATGCAGCA 367807 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAA 33777 || || || | || || | | || | ||||| | || || || || ||| Sbjct 367808 AAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGATTGATCCCAG 367867 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 | | || |||| || | || ||||| || ||||||| || || || || || || Sbjct 367868 TGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCTTCGGCTTTC 367927 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || ||||| | |||||| | | ||| | || || || ||| || | | || ||| Sbjct 367928 TTGTACATCTCCCAGATCTGAGGATAGCGTATCGGAAACATACAGAAGCGGTCGGGGTTT 367987 Query 33898 GGTGCAAG 33905 || ||||| Sbjct 367988 GGGGCAAG 367995 >seq55201 Length=1221137 Score = 138 bits (152), Expect = 1e-27 Identities = 368/558 (66%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||||| || |||||||| || | | || || |||||||| || ||||| Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| | || ||||| || ||||| || |||| ||| ||||| ||||| Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAA 301323 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || ||||| || ||| || || | || | ||| || | | | | | |||| Sbjct 301322 ATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA--- 301266 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| | ||||| || || || || || || |||||| | Sbjct 301265 ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGA 301206 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || | |||||| || ||||| | ||||| |||| | ||||||||||||| Sbjct 301205 AAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATT 301146 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || ||||||||||||||||| |||||||| |||||||| | |||||| | | Sbjct 301145 TCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGT 301086 Query 33661 TGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||| | || ||||| | || | || ||| || || || || || || Sbjct 301085 TGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGC 301027 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 33776 ||| || || | || || | | || | ||||| | || ||| | || ||| Sbjct 301026 AAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCA 300967 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | | | |||| || | || || |||||| | ||||| || || |||||||| || Sbjct 300966 GTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTT 300907 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 300906 CTTGTACATCTCCCAGAT 300889 >seq2987 Length=13944 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || || ||||| | || | ||| || | |||| | |||| |||||| |||| |||||| Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 |||||| | ||||| || || ||| || |||||| ||||||||||||| || ||| Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| ||||| || || || || | ||| || ||||| || ||||| || Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861 Query 63552 CCCTCTATGCTATCATCGATCATG 63575 || || ||||||||||| ||||| Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| || | |||||| || || || ||||||||| | ||| | | ||| Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | || || || || ||||| || || || || || | || | ||| || Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||||||||| || | ||| | |||||| | ||||||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||||||||||| | || ||| || || || || ||||| Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223 >seq40021 Length=871558 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | |||| |||| | | |||||||| || || Sbjct 118230 TCCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCC 118171 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 ||||| | |||||| || || || || || ||| |||||||||| || || || Sbjct 118170 ATTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGA 118111 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | || ||||| || || ||| |||| || || |||||| || ||||| || Sbjct 118110 GACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATAT 118051 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| ||||| || || || ||||| Sbjct 118050 TCCCTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCT 118009 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| |||||||| || |||||||||||||| || |||||||| | || | |||| Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | || || || || ||||| || |||||| |||| || || | ||| | Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797 Query 63731 CATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCC 63788 ||| ||||| || ||||| || | | | | | ||||| | ||| ||||| | || Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTT--AGAAGATAGGACCTCTCG 117739 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 | ||||||||| ||||| || | || |||||||| || ||||| || Sbjct 117738 AGAGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622379523790320