Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq25504 145 9e-30
seq55201 138 1e-27
seq2987 107 2e-18
seq40021 95.1 2e-14
>seq25504
Length=639989
Score = 145 bits (160), Expect = 9e-30
Identities = 398/608 (65%), Gaps = 9/608 (1%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || || ||||||||||||||||| | | || || |||||||| || |||||
Sbjct 367391 CAAGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGA 367450
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
||||||||||| || | ||| || ||||| || |||| | ||| || || ||||||
Sbjct 367451 CCGGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAG 367510
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33480
||||| || || |||||| |||| | | |||| || || || | |||
Sbjct 367511 ATTCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGAGGCGTC---G 367567
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||||| | | ||||| | ||||| || || || | || || |||||||
Sbjct 367568 ATCCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGG 367627
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
||||||| | ||| ||| |||||| | || || |||| | ||| || |||||
Sbjct 367628 AAGAGATGGGATTTCTCACAGGAATCTTTGATGTATGTTTCGAGAAGAAGGCTGTACATC 367687
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || || |||||||| ||||| ||||||||||| ||||| | |||||| | | |
Sbjct 367688 TCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCCTCCGGGAGC 367747
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
||||| || | || || | || | || || || ||||| ||| || |||
Sbjct 367748 TGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCAGATGCAGCA 367807
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAA 33777
|| || || | || || | | || | ||||| | || || || || |||
Sbjct 367808 AAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGATTGATCCCAG 367867
Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837
| | || |||| || | || ||||| || ||||||| || || || || || ||
Sbjct 367868 TGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCTTCGGCTTTC 367927
Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897
|| ||||| | |||||| | | ||| | || || || ||| || | | || |||
Sbjct 367928 TTGTACATCTCCCAGATCTGAGGATAGCGTATCGGAAACATACAGAAGCGGTCGGGGTTT 367987
Query 33898 GGTGCAAG 33905
|| |||||
Sbjct 367988 GGGGCAAG 367995
>seq55201
Length=1221137
Score = 138 bits (152), Expect = 1e-27
Identities = 368/558 (66%), Gaps = 11/558 (2%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || ||||| || |||||||| || | | || || |||||||| || |||||
Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| | || ||||| || ||||| || |||| ||| ||||| |||||
Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAA 301323
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480
|| ||||| || ||| || || | || | ||| || | | | | | ||||
Sbjct 301322 ATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA--- 301266
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||||| | ||||| | ||||| || || || || || || |||||| |
Sbjct 301265 ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGA 301206
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
|| || | |||||| || ||||| | ||||| |||| | |||||||||||||
Sbjct 301205 AAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATT 301146
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || ||||||||||||||||| |||||||| |||||||| | |||||| | |
Sbjct 301145 TCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGT 301086
Query 33661 TGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719
|| ||||| | || ||||| | || | || ||| || || || || || ||
Sbjct 301085 TGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGC 301027
Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 33776
||| || || | || || | | || | ||||| | || ||| | || |||
Sbjct 301026 AAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCA 300967
Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
| | | |||| || | || || |||||| | ||||| || || |||||||| ||
Sbjct 300966 GTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTT 300907
Query 33837 TTTATACATGTTCCAGAT 33854
|| ||||| | ||||||
Sbjct 300906 CTTGTACATCTCCCAGAT 300889
>seq2987
Length=13944
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431
|| || ||||| | || | ||| || | |||| | |||| |||||| |||| ||||||
Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741
Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491
|||||| | ||||| || || ||| || |||||| ||||||||||||| || |||
Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801
Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551
| ||| ||||| || || || || | ||| || ||||| || ||||| ||
Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861
Query 63552 CCCTCTATGCTATCATCGATCATG 63575
|| || ||||||||||| |||||
Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670
||| || ||||| || | |||||| || || || ||||||||| | ||| | | |||
Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055
Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730
|| || | || || || || ||||| || || || || || | || | ||| ||
Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115
Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790
|||||||||||||||||| || | ||| | |||||| | ||||||| | || |
Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175
Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
||||||||||||||||| | || ||| || || || || |||||
Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223
>seq40021
Length=871558
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| ||||| | || | ||| || | |||| |||| | | |||||||| || ||
Sbjct 118230 TCCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCC 118171
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
||||| | |||||| || || || || || ||| |||||||||| || || ||
Sbjct 118170 ATTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGA 118111
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| || ||||| || || ||| |||| || || |||||| || ||||| ||
Sbjct 118110 GACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATAT 118051
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
||||| ||||||||||| ||||| || || || |||||
Sbjct 118050 TCCCTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCT 118009
Score = 89.7 bits (98), Expect = 6e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670
||| |||||||| || |||||||||||||| || |||||||| | || | ||||
Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857
Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730
|| || | || || || || ||||| || |||||| |||| || || | ||| |
Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797
Query 63731 CATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCC 63788
||| ||||| || ||||| || | | | | | ||||| | ||| ||||| | ||
Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTT--AGAAGATAGGACCTCTCG 117739
Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
| ||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct 117738 AGAGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622379523790320
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