Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 147 6e-30
seq2987 95.1 3e-14
seq40021 89.7 1e-12
>seq55201
Length=1221137
Score = 147 bits (162), Expect = 6e-30
Identities = 355/530 (67%), Gaps = 12/530 (2%)
Strand=Plus/Plus
Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCA 22539
|||| || || || || | || || ||| |||||||| |||||||| ||||| |||
Sbjct 301280 CATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGC- 301338
Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599
|| || || ||||| ||||| || || || | | ||||| ||||| || || || ||
Sbjct 301339 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAAC 301398
Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659
||| | || || ||||||||||| ||| ||| ||||| || | ||||| | |
Sbjct 301399 GAGCTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGCCTGCCTTTTATATAGTCTT 301458
Query 22660 CATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAA 22719
| |||| | || || || | || | || | || ||| || | |||| || ||
Sbjct 301459 CTGATCA---ACAAGATTTCAGAGGAGAGGGTTCGAGAGATTGTTGCGGATGCTGTGGAT 301515
Query 22720 CTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAA 22779
|||| | ||| ||||||| || | ||| ||| | || || || |||||
Sbjct 301516 ATTGAGAGGGAGTTTGTTTGCGATGCACTTCCATGCGCTCTTGTGGGAATGAACGCCGAT 301575
Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCA 22839
|||||| |||||| | ||||| || ||||| || || | || |||||||
Sbjct 301576 CTAATGAGCCGCTATATTGAGTTTGTCGCTGATCGGCTTCTAGGAGCTCTGGGTTATGGC 301635
Query 22840 AAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899
||| ||| || ||||||||||| |||||||| || || |||||| | || |||
Sbjct 301636 AAGTTGTATGGTGTATCAAATCCATTTGACTGGATGGAGCTCATATCACTTCAGGGTAAG 301695
Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC--AGGTGTTATGGATGCAT 22957
|| |||||||| || || || || || ||||| || || || |||| | | || || |
Sbjct 301696 ACGAATTTCTTTGAGAAGAGGGTCGGGGAATATCAGAAGGCGTCGGTGATGTCGA-GC-T 301753
Query 22958 TGAATG---ATAGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAA 23004
|||||| || | || || | |||| ||||||||||| || |||
Sbjct 301754 TGAATGGTAATGGCGGAAGCCATGAGTTTAAGTTAGATGAAGATTTCTAA 301803
>seq2987
Length=13944
Score = 95.1 bits (104), Expect = 3e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681
||||| || ||| ||| || || || | ||| || | ||| | ||||| ||||| |
Sbjct 1884 ATGAAAGATGATAGCATTGATGGGATTTATGATACTTTAAAGGAGTGTGCAGTTATTAGC 1825
Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740
||| ||| || ||||||||||| || | |||||| |||||| ||| | | ||||||||
Sbjct 1824 AAGTCTGCTGGAGGAATTGGTGTGTCAGTTCACAATATTCGTGCCACTGGA-AGTTACAT 1766
Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800
|| || ||| ||| || ||||| | ||||||||| | || || | | | ||||
Sbjct 1765 CCGTGGAACAAATGGAACATCAAATGGTATTGTTCCCATGTTGCGAGTATGTAATGATAC 1706
Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839
||| | || || || || || || ||||| | |||||
Sbjct 1705 TGCTCGTTATGTTGATCAAGGGGGTGGAAAAAGGAAAGG 1667
>seq40021
Length=871558
Score = 89.7 bits (98), Expect = 1e-12
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA-ATTGTGCTCTTATTTC 363680
||||| || ||| ||| ||||| || | ||| || ||||| | | |||||| | ||
Sbjct 118027 ATGAAAGATGATAGCATTGAGGGAATATATGATAC-CTTAAAAGAGTGTGCTATAATAAG 118085
Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739
||| ||| || |||||||| || || |||||||| ||||||| || | |||||||
Sbjct 118086 CAAATCTGCTGGTGGAATTGGCGTCTCCATCCACAACATTCGTGCCACTGGG-AGTTACA 118144
Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799
|||| || ||| || || ||||| | ||||| ||||| || || ||| | |||
Sbjct 118145 TTCGTGGGACAAATGGTGTTTCAAATGGCATAGTTCCAATGCTACGGGTTTTTAATGATA 118204
Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839
|||| | || || || || || ||||| || | |||||
Sbjct 118205 CTGCTCGCTATGTTGATCAAGGAGGAGGGAAAAGGAAAGG 118244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302136193609364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |