Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq55201 147 6e-30 seq2987 95.1 3e-14 seq40021 89.7 1e-12 >seq55201 Length=1221137 Score = 147 bits (162), Expect = 6e-30 Identities = 355/530 (67%), Gaps = 12/530 (2%) Strand=Plus/Plus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCA 22539 |||| || || || || | || || ||| |||||||| |||||||| ||||| ||| Sbjct 301280 CATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGC- 301338 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 || || || ||||| ||||| || || || | | ||||| ||||| || || || || Sbjct 301339 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAAC 301398 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659 ||| | || || ||||||||||| ||| ||| ||||| || | ||||| | | Sbjct 301399 GAGCTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGCCTGCCTTTTATATAGTCTT 301458 Query 22660 CATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAA 22719 | |||| | || || || | || | || | || ||| || | |||| || || Sbjct 301459 CTGATCA---ACAAGATTTCAGAGGAGAGGGTTCGAGAGATTGTTGCGGATGCTGTGGAT 301515 Query 22720 CTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAA 22779 |||| | ||| ||||||| || | ||| ||| | || || || ||||| Sbjct 301516 ATTGAGAGGGAGTTTGTTTGCGATGCACTTCCATGCGCTCTTGTGGGAATGAACGCCGAT 301575 Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCA 22839 |||||| |||||| | ||||| || ||||| || || | || ||||||| Sbjct 301576 CTAATGAGCCGCTATATTGAGTTTGTCGCTGATCGGCTTCTAGGAGCTCTGGGTTATGGC 301635 Query 22840 AAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899 ||| ||| || ||||||||||| |||||||| || || |||||| | || ||| Sbjct 301636 AAGTTGTATGGTGTATCAAATCCATTTGACTGGATGGAGCTCATATCACTTCAGGGTAAG 301695 Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC--AGGTGTTATGGATGCAT 22957 || |||||||| || || || || || ||||| || || || |||| | | || || | Sbjct 301696 ACGAATTTCTTTGAGAAGAGGGTCGGGGAATATCAGAAGGCGTCGGTGATGTCGA-GC-T 301753 Query 22958 TGAATG---ATAGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAA 23004 |||||| || | || || | |||| ||||||||||| || ||| Sbjct 301754 TGAATGGTAATGGCGGAAGCCATGAGTTTAAGTTAGATGAAGATTTCTAA 301803 >seq2987 Length=13944 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | ||| || | ||| | ||||| ||||| | Sbjct 1884 ATGAAAGATGATAGCATTGATGGGATTTATGATACTTTAAAGGAGTGTGCAGTTATTAGC 1825 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 ||| ||| || ||||||||||| || | |||||| |||||| ||| | | |||||||| Sbjct 1824 AAGTCTGCTGGAGGAATTGGTGTGTCAGTTCACAATATTCGTGCCACTGGA-AGTTACAT 1766 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| || ||||| | ||||||||| | || || | | | |||| Sbjct 1765 CCGTGGAACAAATGGAACATCAAATGGTATTGTTCCCATGTTGCGAGTATGTAATGATAC 1706 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || || || ||||| | ||||| Sbjct 1705 TGCTCGTTATGTTGATCAAGGGGGTGGAAAAAGGAAAGG 1667 >seq40021 Length=871558 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA-ATTGTGCTCTTATTTC 363680 ||||| || ||| ||| ||||| || | ||| || ||||| | | |||||| | || Sbjct 118027 ATGAAAGATGATAGCATTGAGGGAATATATGATAC-CTTAAAAGAGTGTGCTATAATAAG 118085 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || |||||||| || || |||||||| ||||||| || | ||||||| Sbjct 118086 CAAATCTGCTGGTGGAATTGGCGTCTCCATCCACAACATTCGTGCCACTGGG-AGTTACA 118144 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| || || ||||| | ||||| ||||| || || ||| | ||| Sbjct 118145 TTCGTGGGACAAATGGTGTTTCAAATGGCATAGTTCCAATGCTACGGGTTTTTAATGATA 118204 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| || | ||||| Sbjct 118205 CTGCTCGCTATGTTGATCAAGGAGGAGGGAAAAGGAAAGG 118244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302136193609364