Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq41242 113 4e-20
seq38797 107 2e-18
seq40947 86.0 5e-12
>seq41242
Length=195047
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || || ||||| | || || || || |||||||| ||||||||||| |||
Sbjct 171161 CCACCACGAAGTCTAAGTACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCC 171220
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||||| || ||||| ||| | || | || || ||||| |||
Sbjct 171221 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGG 171280
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| |||| |||||| | | | | || || | ||||
Sbjct 171281 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACC 171340
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||||||||| || || || |||||||| ||||||||
Sbjct 171341 TCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 171387
Score = 104 bits (114), Expect = 2e-17
Identities = 147/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || || ||||| || |||||||||||||| | ||| | |||||||||| ||
Sbjct 172097 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAACTGC 172156
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || ||| | || |||| ||| || ||| || | |||||| || || || ||
Sbjct 172157 TTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTTA 172216
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
||| ||||| | | | |||||| | |||| ||| | |||||||| || ||||
Sbjct 172217 GCT--TTCACATTATCGATGGTGTCGGAGCTCTCCACTTCAAGTGTGATGGTCTTGCCGG 172274
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || ||||||||||| ||||||||
Sbjct 172275 TGAGGGTTTTGACAAAGATCTGCAT 172299
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || || |||||||| || |||||||| || | || | | ||||| | |||
Sbjct 146693 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 146752
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || ||| | ||||||| ||| || || ||| | |||||||||||| || |||
Sbjct 146753 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 146812
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| |||||| | | | || ||| | |||| ||||| |||||||| ||||| |
Sbjct 146813 GC--CTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCG 146870
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || || ||||||||||||||
Sbjct 146871 TAAGAGTCTTCACAAAAATCTGCAT 146895
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || || |||||||| || |||||||| || | || | | ||||| | |||
Sbjct 151857 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 151916
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || ||| | ||||||| ||| || || ||| | |||||||||||| || |||
Sbjct 151917 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 151976
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| |||||| | | | || ||| | |||| ||||| |||||||| ||||| |
Sbjct 151977 GC--CTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCG 152034
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || || ||||||||||||||
Sbjct 152035 TAAGAGTCTTCACAAAAATCTGCAT 152059
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | || | || || | ||| || |||||||||||||| ||||| ||||| ||
Sbjct 171616 CCCTCCCCTAAGGCGGAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTATAGTCTGC 171675
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| || | | ||||| | || ||||| || | || | || ||| |||||| ||
Sbjct 171676 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 171735
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||||| || || || || || |||||| | | | | || || | ||||
Sbjct 171736 AATTCCCTCCTTATCCTGGATCTTAGC--CTTCACGTTGTCGATGGTATCAGAGCTCTCC 171793
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| ||||| || || || |||||||||||||||||
Sbjct 171794 ACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATCTGCAT 171843
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || ||||||||||| ||||||||||| || | ||| | | ||||| | ||
Sbjct 171869 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 171928
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| || | || | || ||| |||||| || | |||||| || || || ||
Sbjct 171929 TTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTA 171988
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| |||||| | | | |||||| | |||| || | ||||||||| || || |
Sbjct 171989 GC--CTTCACGTTATCGATTGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCTG 172046
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| |||||||||||
Sbjct 172047 TGAGGGTCTTGACGAAAATCTGCAT 172071
>seq38797
Length=1288649
Score = 107 bits (118), Expect = 2e-18
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || |||||||| || || |||||||||||||||| ||| ||||||| | |||
Sbjct 629421 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGTCCGTCCTCAAGTTGC 629362
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||||||| | ||||||| ||||||||| ||| | |||||| || || || ||
Sbjct 629361 TTGCCCGCAAAGATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 629302
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | | |||||| | || || | ||||||||| ||||| |
Sbjct 629301 GC--CTTGACGTTGTCGATGGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTCTTTCCAG 629244
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| ||||| || || || ||||||||
Sbjct 629243 TGAGCGTCTTCACGAAGATCTGCAT 629219
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || ||||||||||| ||||||||||| |||| ||| | | ||||| | ||
Sbjct 629193 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGC 629134
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| |||||||||| || | ||||| ||||| || ||
Sbjct 629133 TTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTG 629074
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | | ||||| | ||| || | ||||||||| || ||||
Sbjct 629073 GC--CTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAAGGTGATGGTCTTGCCGG 629016
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || || || || ||||||||
Sbjct 629015 TTAGAGTCTTCACGAAGATCTGCAT 628991
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| ||||||||||| || || ||||| ||||| || | || | ||||||| | |||
Sbjct 629649 TGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTGT 629590
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || ||| | ||||||| || |||||| || | ||||| ||||| || |||
Sbjct 629589 TTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 629530
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | | ||||| | |||| |||| |||||| |||||||| |
Sbjct 629529 GC--CTTTACGTTGTCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAG 629472
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || || ||||| || |||||
Sbjct 629471 TGAGGGTCTTCACAAATATTTGCAT 629447
>seq40947
Length=4604
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| || || | || || | || || || |||||||| || |||||||||||||
Sbjct 1224 CCCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1165
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| |||| | ||||||| | ||||| || || | || |||| ||| |||||| ||
Sbjct 1164 GAGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGG 1105
Query 16828 CACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| |||| | | | |||| | ||| || | | | |||||| ||||
Sbjct 1104 GATTCCCTCCTTGTCCTGGATTTTGGT-CTTAACGTTCTCGATCGTGTCGGAACTCTCCA 1046
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || || ||||| || || || || || ||||||||
Sbjct 1045 CCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404728082096980
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