Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq41242 113 4e-20 seq38797 107 2e-18 seq40947 86.0 5e-12 >seq41242 Length=195047 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || ||||| | || || || || |||||||| ||||||||||| ||| Sbjct 171161 CCACCACGAAGTCTAAGTACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCC 171220 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||||| || ||||| ||| | || | || || ||||| ||| Sbjct 171221 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGG 171280 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| |||||| | | | | || || | |||| Sbjct 171281 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACC 171340 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||||||| || || || |||||||| |||||||| Sbjct 171341 TCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 171387 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || ||||| || |||||||||||||| | ||| | |||||||||| || Sbjct 172097 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAACTGC 172156 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || |||| ||| || ||| || | |||||| || || || || Sbjct 172157 TTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTTA 172216 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | |||||| | |||| ||| | |||||||| || |||| Sbjct 172217 GCT--TTCACATTATCGATGGTGTCGGAGCTCTCCACTTCAAGTGTGATGGTCTTGCCGG 172274 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||||||| |||||||| Sbjct 172275 TGAGGGTTTTGACAAAGATCTGCAT 172299 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || |||||||| || |||||||| || | || | | ||||| | ||| Sbjct 146693 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 146752 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | ||||||| ||| || || ||| | |||||||||||| || ||| Sbjct 146753 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 146812 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | || ||| | |||| ||||| |||||||| ||||| | Sbjct 146813 GC--CTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCG 146870 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || |||||||||||||| Sbjct 146871 TAAGAGTCTTCACAAAAATCTGCAT 146895 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || |||||||| || |||||||| || | || | | ||||| | ||| Sbjct 151857 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 151916 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | ||||||| ||| || || ||| | |||||||||||| || ||| Sbjct 151917 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 151976 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | || ||| | |||| ||||| |||||||| ||||| | Sbjct 151977 GC--CTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCG 152034 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || |||||||||||||| Sbjct 152035 TAAGAGTCTTCACAAAAATCTGCAT 152059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | || || | ||| || |||||||||||||| ||||| ||||| || Sbjct 171616 CCCTCCCCTAAGGCGGAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTATAGTCTGC 171675 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||| | || ||||| || | || | || ||| |||||| || Sbjct 171676 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 171735 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| || || || || || |||||| | | | | || || | |||| Sbjct 171736 AATTCCCTCCTTATCCTGGATCTTAGC--CTTCACGTTGTCGATGGTATCAGAGCTCTCC 171793 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||||| || || || ||||||||||||||||| Sbjct 171794 ACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATCTGCAT 171843 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||||||||| || | ||| | | ||||| | || Sbjct 171869 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 171928 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || | || ||| |||||| || | |||||| || || || || Sbjct 171929 TTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTA 171988 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | |||||| | |||| || | ||||||||| || || | Sbjct 171989 GC--CTTCACGTTATCGATTGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCTG 172046 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| ||||||||||| Sbjct 172047 TGAGGGTCTTGACGAAAATCTGCAT 172071 >seq38797 Length=1288649 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| || || |||||||||||||||| ||| ||||||| | ||| Sbjct 629421 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGTCCGTCCTCAAGTTGC 629362 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||||||| | ||||||| ||||||||| ||| | |||||| || || || || Sbjct 629361 TTGCCCGCAAAGATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 629302 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| | || || | ||||||||| ||||| | Sbjct 629301 GC--CTTGACGTTGTCGATGGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTCTTTCCAG 629244 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || |||||||| Sbjct 629243 TGAGCGTCTTCACGAAGATCTGCAT 629219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||||||||| |||| ||| | | ||||| | || Sbjct 629193 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGC 629134 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| |||||||||| || | ||||| ||||| || || Sbjct 629133 TTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTG 629074 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | ||| || | ||||||||| || |||| Sbjct 629073 GC--CTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAAGGTGATGGTCTTGCCGG 629016 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| Sbjct 629015 TTAGAGTCTTCACGAAGATCTGCAT 628991 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||||||||| || || ||||| ||||| || | || | ||||||| | ||| Sbjct 629649 TGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTGT 629590 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | ||||||| || |||||| || | ||||| ||||| || ||| Sbjct 629589 TTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 629530 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| |||| |||||| |||||||| | Sbjct 629529 GC--CTTTACGTTGTCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAG 629472 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || ||||| || ||||| Sbjct 629471 TGAGGGTCTTCACAAATATTTGCAT 629447 >seq40947 Length=4604 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || || | || || || |||||||| || ||||||||||||| Sbjct 1224 CCCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1165 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | ||||||| | ||||| || || | || |||| ||| |||||| || Sbjct 1164 GAGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGG 1105 Query 16828 CACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| |||| | | | |||| | ||| || | | | |||||| |||| Sbjct 1104 GATTCCCTCCTTGTCCTGGATTTTGGT-CTTAACGTTCTCGATCGTGTCGGAACTCTCCA 1046 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || ||||| || || || || || |||||||| Sbjct 1045 CCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404728082096980