Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq55201 134 2e-26 seq2987 111 2e-19 seq40021 95.1 2e-14 >seq55201 Length=1221137 Score = 134 bits (148), Expect = 2e-26 Identities = 384/583 (66%), Gaps = 13/583 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||||| || |||||||| || | | || | |||||||| || ||||| Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| | || ||||| || ||||| || |||| |||| | | | ||||| ||||| Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCAGAGAAGAA 301324 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 32836 ||| ||||| || || || || | || | ||| || | | | | | |||| Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA-- 301266 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| | ||||| || || || || ||||| || ||| Sbjct 301265 -ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACG 301207 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||| || | |||||| || ||||| | || || || | | |||||||||||| Sbjct 301206 AAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACAT 301147 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 ||| || ||||||||||||||||| || ||||| |||||||| | |||||| | | Sbjct 301146 TTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAG 301087 Query 33017 CTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075 || ||||| | || ||||| | |||| || ||| || || || || || | Sbjct 301086 TTGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGG 301028 Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCC 33132 |||| || || | || || | | || | ||||| | || ||| | || || Sbjct 301027 CAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCC 300968 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | | | |||| || | || || |||||| | ||||| || || |||||||| | Sbjct 300967 AGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTT 300908 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | || ||||| | |||||| | |||| | || ||||| || Sbjct 300907 TCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACAT 300865 >seq2987 Length=13944 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | ||| || | |||| | |||| |||||| |||| ||||||| Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || ||| || |||||| ||||||||||||| || ||| Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || || || | ||| || ||||| |||||||| || Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || || |||||||| ||||| Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | |||||| || || || ||||||||| | ||| | | ||| Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || || || ||||| || || || || || | || | ||| || Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||||||||| || | ||| | |||||| | ||||||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||||||||||||||| | || ||| || || || || ||||| Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223 >seq40021 Length=871558 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| |||||||| || |||||||||||||| ||||||||||| | || | |||| Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || || || ||||| || |||||| |||| || || | ||| | Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797 Query 63586 CATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCC 63643 ||| ||||| || ||||| || | | | | | ||||| | ||| ||||| | || Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTT--AGAAGATAGGACCTCTCG 117739 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | ||||||||| ||||| || | || |||||||| || ||||| || Sbjct 117738 AGAGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633054586999200