Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 134 2e-26
seq2987 111 2e-19
seq40021 95.1 2e-14
>seq55201
Length=1221137
Score = 134 bits (148), Expect = 2e-26
Identities = 384/583 (66%), Gaps = 13/583 (2%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| || || ||||| || |||||||| || | | || | |||||||| || |||||
Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779
|||||||| | || ||||| || ||||| || |||| |||| | | | ||||| |||||
Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCAGAGAAGAA 301324
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 32836
||| ||||| || || || || | || | ||| || | | | | | ||||
Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA-- 301266
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| | ||||| | ||||| || || || || ||||| || |||
Sbjct 301265 -ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACG 301207
Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956
||| || | |||||| || ||||| | || || || | | ||||||||||||
Sbjct 301206 AAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACAT 301147
Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016
||| || ||||||||||||||||| || ||||| |||||||| | |||||| | |
Sbjct 301146 TTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAG 301087
Query 33017 CTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075
|| ||||| | || ||||| | |||| || ||| || || || || || |
Sbjct 301086 TTGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGG 301028
Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCC 33132
|||| || || | || || | | || | ||||| | || ||| | || ||
Sbjct 301027 CAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCC 300968
Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
| | | | |||| || | || || |||||| | ||||| || || |||||||| |
Sbjct 300967 AGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTT 300908
Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
| || ||||| | |||||| | |||| | || ||||| ||
Sbjct 300907 TCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACAT 300865
>seq2987
Length=13944
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
|| || ||||| | || | ||| || | |||| | |||| |||||| |||| |||||||
Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|| ||||| ||||| || || ||| || |||||| ||||||||||||| || |||
Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| ||||| || || || || | ||| || ||||| |||||||| ||
Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861
Query 63407 CCCTCTATACTATCATCCATCATG 63430
|| || || |||||||| |||||
Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
||| || ||||| || | |||||| || || || ||||||||| | ||| | | |||
Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | || || || || ||||| || || || || || | || | ||| ||
Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||||||||||||||| || | ||| | |||||| | ||||||| | || |
Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||||||||||||||| | || ||| || || || || |||||
Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAAT 2223
>seq40021
Length=871558
Score = 95.1 bits (104), Expect = 2e-14
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
||| |||||||| || |||||||||||||| ||||||||||| | || | ||||
Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | || || || || ||||| || |||||| |||| || || | ||| |
Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797
Query 63586 CATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCC 63643
||| ||||| || ||||| || | | | | | ||||| | ||| ||||| | ||
Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTT--AGAAGATAGGACCTCTCG 117739
Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
| ||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct 117738 AGAGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633054586999200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |