Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq41242 118 9e-22 seq38797 114 1e-20 seq19607 100 2e-16 seq15016 96.9 3e-15 seq14985 96.9 3e-15 >seq41242 Length=195047 Score = 118 bits (130), Expect = 9e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| | ||||||||| || Sbjct 146895 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 146836 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | || ||||| ||| ||| |||||||| || ||||| || || || Sbjct 146835 GATACAATTGA-TAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 146777 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || ||||| | || |||| |||||| | | || ||||| Sbjct 146776 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 146717 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| ||||| || || || Sbjct 146716 TATTCAAAAGGAATCTACCCTCCA 146693 Score = 118 bits (130), Expect = 9e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| | ||||||||| || Sbjct 152059 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 152000 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | || ||||| ||| ||| |||||||| || ||||| || || || Sbjct 151999 GATACAATTGA-TAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 151941 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || ||||| | || |||| |||||| | | || ||||| Sbjct 151940 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 151881 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| ||||| || || || Sbjct 151880 TATTCAAAAGGAATCTACCCTCCA 151857 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || ||||||| | ||||| ||| || Sbjct 171159 ATGCAAATATTTGTGAAGACGCTTACTGGAAAGACCATCACCTTAGAAGTAGAGAGCTCG 171100 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||| ||| ||||| || ||||| || || || || Sbjct 171099 GACACCATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATCCCGCCAGATCAG 171040 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || ||||| | || |||| |||||| | | ||||||||| Sbjct 171039 CAGAGGCTAATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCCTTGCAGATTACAAT 170980 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || ||| | || || Sbjct 170979 ATTCAGAAGGAATCCACCCTCCATCTTGTACT 170948 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| ||||||| | || |||||| ||| Sbjct 171387 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAGAGCTCT 171328 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| |||||| ||||| || || || || || ||||| Sbjct 171327 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 171268 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| || | || || | || || ||| || ||||| Sbjct 171267 CAAAGGTTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTGGCAGACTACAAC 171208 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| ||||| || || || |||| || || || Sbjct 171207 ATTCAAAAGGAATCGACCCTTCACCTAGTACTTAGACT 171170 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || || ||| || Sbjct 147123 ATGCAGATCTTTGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGAGTTCC 147064 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || ||||| ||||| || || || || ||||| || ||||| Sbjct 147063 GACACGATTGA-TAACGTGAAGGCTAAAATACAGGATAAGGAGGGCATTCCCCCAGACCA 147005 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | || |||| ||||| | | || ||||| Sbjct 147004 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCGGACTACAA 146945 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || | ||||| Sbjct 146944 CATTCAGAAAGAGTCAACCCTTCACCTGGTGCT 146912 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || || ||| || Sbjct 152287 ATGCAGATCTTTGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGAGTTCC 152228 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || ||||| ||||| || || || || ||||| || ||||| Sbjct 152227 GACACGATTGA-TAACGTGAAGGCTAAAATACAGGATAAGGAGGGCATTCCCCCAGACCA 152169 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | || |||| ||||| | | || ||||| Sbjct 152168 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCGGACTACAA 152109 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || | ||||| Sbjct 152108 CATTCAGAAAGAGTCAACCCTTCACCTGGTGCT 152076 >seq38797 Length=1288649 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || ||| | ||||| | || |||||| || Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| ||||| || ||||||||||| ||||| Sbjct 629507 GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 629566 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| |||||||| ||||| | || || | |||||| | | || || || Sbjct 629567 CAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAAC 629626 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| |||||||| || Sbjct 629627 ATTCAGAAAGAGTCCACGCTCCA 629649 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || ||||||| | || || ||| ||| Sbjct 628991 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACCATCACCTTAGAGGTTGAGAGCTCT 629050 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || |||||| Sbjct 629051 GACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAA 629110 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| ||||| ||| || ||||| Sbjct 629111 CAGAGGCTGATATTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAAC 629170 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || || || || || ||||| || | || || ||||| Sbjct 629171 ATTCAAAAGGAGTCTACTCTTCACTTAGTCCTCCGTCTGAGGGGAGG 629217 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || | ||||| |||| |||||| || Sbjct 628535 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAGGTGGAGAGTTCG 628594 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| ||||| || || || || || || || Sbjct 628595 GATACTATTGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAG 628654 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||||||||| | ||||||| ||||| | | |||||||| Sbjct 628655 CAAAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTTGCTGATTACAAC 628714 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| |||| || | || || ||||| Sbjct 628715 ATCCAGAAGGAGTCCACCCTTCATCTAGTTCTCCGTCTGAGGGGAGG 628761 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| | || || || | ||||| | || || ||| ||| Sbjct 628763 ATGCAGATCTTCGTAAAGACTCTCACTGGCAAGACGATCACCCTAGAGGTTGAGAGCTCT 628822 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| |||||||| || || || || ||||| Sbjct 628823 GACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAAGAGGGTATCCCCCCGGACCAG 628882 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | | |||||||| Sbjct 628883 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAAC 628942 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || || | || || ||||| Sbjct 628943 ATCCAGAAGGAGTCCACCCTCCATCTGGTTCTCCGTCTGAGGGGAGG 628989 >seq19607 Length=286188 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 |||||| ||||| || || || || ||| | || || || | ||||| |||| |||| Sbjct 225503 ACGGAAAGATGCAGATCTTCGTCAAAACTCTAACGGGGAAGACGATCACCCTCGAGGTGG 225562 Query 25051 AGTCGTCTGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 |||| ||||| || ||||| | || | ||| ||| ||| || || || || ||||| Sbjct 225563 AGTCCTCTGATACAATCGA-TAACGTTAAGGCAAAGATCCAGGATAAGGAGGGCATTCCG 225621 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || |||||||| | || || ||||| || || | || || | || || | | | Sbjct 225622 CCGGATCAACAGCGCTTAATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGTACCCTCGCC 225681 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| || || ||||| ||||| || Sbjct 225682 GATTACAATATCCAGAAGGAATCGACGCTTCA 225713 >seq15016 Length=583550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 |||||| ||||| || || || || || | || || || | ||||| |||| |||| Sbjct 437522 ACGGAAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTGG 437581 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 |||| ||||| || ||||| | ||| ||||||| || || || || ||||| | Sbjct 437582 AGTCCTCTGATACAATCGACAACGTTAAGGCAAAAATCCAGGATAAGGAGGGCATTCCGC 437641 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || |||||||| | || || ||||| || || | || || | || || | | || Sbjct 437642 CAGATCAACAGCGCTTAATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGTACCCTCGCCG 437701 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||||||| || || ||||| ||||| || Sbjct 437702 ATTACAATATCCAGAAGGAATCGACGCTTCA 437732 >seq14985 Length=335608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || ||||||||||| ||||| || | ||||||||||| || || || ||| Sbjct 170256 GACAAGGAGGGCATTCCACCTGATCAACAACGATTGATTTTTGCCGGGAAGCAGTTGGAA 170197 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| || | | |||||||| ||||| || || || || || ||| | || | Sbjct 170196 GATGGTCGGACCTTAGCGGATTACAACATTCAGAAGGAGTCAACCCTCCATCTGGTTTTG 170137 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 170136 AGGCTTAGAGGCGGAA 170121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432942991051130