Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 107 2e-18
seq31084 91.5 2e-13
seq49376 87.8 2e-12
seq13347 86.0 7e-12
seq41013 84.2 2e-11
>seq55201
Length=1221137
Score = 107 bits (118), Expect = 2e-18
Identities = 378/587 (64%), Gaps = 14/587 (2%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| ||||||||| ||| | ||| || || || ||||||| ||| ||| |||||| |
Sbjct 301443 GCAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAG 301384
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209
||| || | || || || ||||||||||| || | || ||| || || ||||| || |
Sbjct 301383 ACCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGA-TGGCGCAGAAGCTGCCAGAGAAGA 301325
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTAC 93266
| |||||||| ||| || || || | ||| || || ||||| || | || | |
Sbjct 301324 AAATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA- 301266
Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
||||| | ||||| | || || | || || | || ||||| |
Sbjct 301265 -----ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGG 301211
Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386
| ||| ||| | || | || ||| ||||| || |||| | ||| ||
Sbjct 301210 CACGAAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTAT 301151
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
||||||| || || | || || || || || || || |||||||| | ||| ||||
Sbjct 301150 ACATTTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCG 301091
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
|| || ||||| | |||| | | || || ||| ||| |||||||| || |
Sbjct 301090 GGAGTTGAACTTCGCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAG 301031
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTAT 93563
| ||||| || || | | || | | || || ||| || |||| | ||
Sbjct 301030 CGGCAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGAT 300971
Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
|||| | || |||| ||| || ||||| ||||| ||||||| || || || ||||
Sbjct 300970 CCCAGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTG 300911
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670
|||| |||||||| ||||| || | |||| | || ||||| |||
Sbjct 300910 CTTTCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACATG 300864
>seq31084
Length=417810
Score = 91.5 bits (100), Expect = 2e-13
Identities = 82/102 (80%), Gaps = 6/102 (6%)
Strand=Plus/Plus
Query 126257 CTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC 126316
||||| | |||||| ||||||||||||||||||||||||| | ||| |||||| ||||
Sbjct 331014 CTATTAAACGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTC 331071
Query 126317 GGGA----GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
| || |||||||||| || ||||| ||||||| || ||
Sbjct 331072 GTGAGAGGGCGTGGGTTCAAATCCCACTTCTGACAATTTTTT 331113
>seq49376
Length=1181179
Score = 87.8 bits (96), Expect = 2e-12
Identities = 76/93 (82%), Gaps = 6/93 (6%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320
|| |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 44693 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGA 44636
Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||||| || ||||| ||||||| ||
Sbjct 44635 GGGCGTGGGTTCAAATCCCACTTCTGACAATTT 44603
>seq13347
Length=715930
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 454372 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 454315
Query 126328 TTCGAACCCCACACCTGACAAATT 126351
||| || |||||| ||| ||||||
Sbjct 454314 TTCAAATCCCACAGCTGTCAAATT 454291
>seq41013
Length=721676
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG----GAG 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| |||||| | |
Sbjct 435666 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGGATGAGGG 435723
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 435724 CGTGGGTTCAAATCCCACTTCTGACA 435749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556353346674480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |