Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq55201 107 2e-18 seq31084 91.5 2e-13 seq49376 87.8 2e-12 seq13347 86.0 7e-12 seq41013 84.2 2e-11 >seq55201 Length=1221137 Score = 107 bits (118), Expect = 2e-18 Identities = 378/587 (64%), Gaps = 14/587 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||| ||| | ||| || || || ||||||| ||| ||| |||||| | Sbjct 301443 GCAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAG 301384 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209 ||| || | || || || ||||||||||| || | || ||| || || ||||| || | Sbjct 301383 ACCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGA-TGGCGCAGAAGCTGCCAGAGAAGA 301325 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTAC 93266 | |||||||| ||| || || || | ||| || || ||||| || | || | | Sbjct 301324 AAATACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCA- 301266 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 ||||| | ||||| | || || | || || | || ||||| | Sbjct 301265 -----ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGG 301211 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | ||| ||| | || | || ||| ||||| || |||| | ||| || Sbjct 301210 CACGAAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTAT 301151 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 ||||||| || || | || || || || || || || |||||||| | ||| |||| Sbjct 301150 ACATTTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCG 301091 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 || || ||||| | |||| | | || || ||| ||| |||||||| || | Sbjct 301090 GGAGTTGAACTTCGCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAG 301031 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTAT 93563 | ||||| || || | | || | | || || ||| || |||| | || Sbjct 301030 CGGCAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGAT 300971 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||| | || |||| ||| || ||||| ||||| ||||||| || || || |||| Sbjct 300970 CCCAGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTG 300911 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 |||| |||||||| ||||| || | |||| | || ||||| ||| Sbjct 300910 CTTTCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACATG 300864 >seq31084 Length=417810 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/102 (80%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 126257 CTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC 126316 ||||| | |||||| ||||||||||||||||||||||||| | ||| |||||| |||| Sbjct 331014 CTATTAAACGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTC 331071 Query 126317 GGGA----GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 | || |||||||||| || ||||| ||||||| || || Sbjct 331072 GTGAGAGGGCGTGGGTTCAAATCCCACTTCTGACAATTTTTT 331113 >seq49376 Length=1181179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 44693 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGA 44636 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 44635 GGGCGTGGGTTCAAATCCCACTTCTGACAATTT 44603 >seq13347 Length=715930 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 454372 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 454315 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 454314 TTCAAATCCCACAGCTGTCAAATT 454291 >seq41013 Length=721676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG----GAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||||| | | Sbjct 435666 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGGATGAGGG 435723 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 435724 CGTGGGTTCAAATCCCACTTCTGACA 435749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556353346674480