Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq38797 131 1e-25
seq41242 129 5e-25
seq40947 125 6e-24
seq14985 102 7e-17
>seq38797
Length=1288649
Score = 131 bits (144), Expect = 1e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273
|| ||||||| || || || || ||| | ||||| || ||| |||| || || ||||| |
Sbjct 628530 TACAGATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAGGTGGAGA 628589
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
| ||||| | ||| | | || || || || ||||||||||| || || || |
Sbjct 628590 GTTCGGATACTATTGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAG 628649
Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393
|||| ||| | || || ||||||||||||||| | || ||| ||||||| | | ||||
Sbjct 628650 ATCAGCAAAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTTGCTGATT 628709
Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||||| || || || |||||| | ||| ||||| | || || | |||||
Sbjct 628710 ACAACATCCAGAAGGAGTCCACCCTTCATCTAGTTCTCCGTCTGAGGGGAGG 628761
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || ||||| |||| || || ||||| | | |
Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || ||| || || ||||||||||| |||||||| || ||
Sbjct 629507 GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 629566
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | ||||| |||||||| |||||| | ||||| |||||| | | || || |||
Sbjct 629567 CAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAAC 629626
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| ||||| |||||
Sbjct 629627 ATTCAGAAAGAGTCCAC 629643
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || ||| ||||||| || || |||| | || || || | | |
Sbjct 628990 GATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACCATCACCTTAGAGGTTGAGAGCTC 629049
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | ||| | | || || || || ||||||||||| || || || || ||
Sbjct 629050 TGACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 629109
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
||| | || |||||||||||||| ||| | |||||| ||||||| | | || |||||
Sbjct 629110 ACAGAGGCTGATATTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAA 629169
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||||||| || || || | || ||||| | || || | |||||
Sbjct 629170 CATTCAAAAGGAGTCTACTCTTCACTTAGTCCTCCGTCTGAGGGGAGG 629217
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || ||| | || || || ||| |||| || || || || | | |
Sbjct 628762 GATGCAGATCTTCGTAAAGACTCTCACTGGCAAGACGATCACCCTAGAGGTTGAGAGCTC 628821
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | ||| | | || || || || ||||| |||||||| || || || ||
Sbjct 628822 TGACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAAGAGGGTATCCCCCCGGACCA 628881
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || ||||||||||| ||| | || ||| ||||||| | | ||||||||
Sbjct 628882 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 628941
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||| || || || |||||| | ||| | ||| | || || | |||||
Sbjct 628942 CATCCAGAAGGAGTCCACCCTCCATCTGGTTCTCCGTCTGAGGGGAGG 628989
>seq41242
Length=195047
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || ||||| |||| ||||| ||||| | | |
Sbjct 171387 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAGAGCTCT 171328
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || | || ||||| || ||||||||||| || || ||||| ||
Sbjct 171327 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 171268
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | | |||||||||||||| ||| | ||||| ||| ||| | | || ||||||
Sbjct 171267 CAAAGGTTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTGGCAGACTACAAC 171208
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|||||||| ||||| ||| | || ||||
Sbjct 171207 ATTCAAAAGGAATCGACCCTTCACCTAGT 171179
Score = 122 bits (134), Expect = 7e-23
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| ||||| | ||||| || || |||| ||||||||||| | |
Sbjct 172301 AGATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTTGAAGTGGAGAGCT 172242
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|||| ||| | || || | ||| || || || || |||||||| || || || ||||
Sbjct 172241 CCGACACCATCGATAATGTGAAAGCTAAGATCCAGGATAAGGAGGGCATCCCCCCGGATC 172182
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | || || ||||| || || ||||| ||||| ||||||| | |||| ||||
Sbjct 172181 AGCAGAGGCTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCCGCACCCTTGCCGACTACA 172122
Query 22397 ACATTCAAAAAGAATCCACC 22416
|||| || || ||||| |||
Sbjct 172121 ACATCCAGAAGGAATCTACC 172102
Score = 118 bits (130), Expect = 9e-22
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || ||||| || || | || || || || |||| ||||| ||||| | | |
Sbjct 171616 GATGCAGATATTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTC 171557
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | ||| || | || || || || ||||||||||| || || || || ||
Sbjct 171556 GGACACCATCGACAATGTAAAGGCTAAGATACAGGACAAGGAGGGCATCCCCCCGGACCA 171497
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
||| | || || ||||| ||||| ||| | |||||| ||||||| | | || || ||
Sbjct 171496 GCAAAGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCTGACTATAA 171437
Query 22398 CATTCAAAAAGAATCCACCATACAT 22422
||||||||| ||||||||| | |||
Sbjct 171436 CATTCAAAAGGAATCCACCCTCCAT 171412
Score = 111 bits (122), Expect = 1e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || |||||||| || | ||||| || || |||| ||||| || || | |
Sbjct 147124 GATGCAGATCTTTGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGAGTTC 147065
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
||| || | || | | || ||||| || || |||||||| ||||| || || ||
Sbjct 147064 CGACACGATTGATAACGTGAAGGCTAAAATACAGGATAAGGAGGGCATTCCCCCAGACCA 147005
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || ||||||||||| ||| | |||||| ||||||| || | || |||||
Sbjct 147004 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCGGACTACAA 146945
Query 22398 CATTCAAAAAGAATCCACC 22416
|||||| ||||| || |||
Sbjct 146944 CATTCAGAAAGAGTCAACC 146926
Score = 111 bits (122), Expect = 1e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || |||||||| || | ||||| || || |||| ||||| || || | |
Sbjct 152288 GATGCAGATCTTTGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGAGTTC 152229
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
||| || | || | | || ||||| || || |||||||| ||||| || || ||
Sbjct 152228 CGACACGATTGATAACGTGAAGGCTAAAATACAGGATAAGGAGGGCATTCCCCCAGACCA 152169
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || ||||||||||| ||| | |||||| ||||||| || | || |||||
Sbjct 152168 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCGGACTACAA 152109
Query 22398 CATTCAAAAAGAATCCACC 22416
|||||| ||||| || |||
Sbjct 152108 CATTCAGAAAGAGTCAACC 152090
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || |||| | ||||| || | | |
Sbjct 171159 ATGCAAATATTTGTGAAGACGCTTACTGGAAAGACCATCACCTTAGAAGTAGAGAGCTCG 171100
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| ||| || || ||||||||||| || || || |||||
Sbjct 171099 GACACCATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATCCCGCCAGATCAG 171040
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || || || || |||||| | |||||| |||||| | | ||||||||
Sbjct 171039 CAGAGGCTAATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCCTTGCAGATTACAAT 170980
Query 22399 ATTCAAAAAGAATCCACCATACAT 22422
||||| || ||||||||| | |||
Sbjct 170979 ATTCAGAAGGAATCCACCCTCCAT 170956
>seq40947
Length=4604
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||||||||| ||| | || ||||||||| |||| || || ||||| | | |
Sbjct 1681 ATGCAGATTTTTGTTAAGACTCTTACTGGTAAAACGATCACCCTGGACGTGGAGAGCTCG 1740
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || || |||||||| |||||||| ||||| || |||||
Sbjct 1741 GATACAATTGAGAATGTGAAGTCGAAGATTCAAGATAAGGAGGGGATTCCGCCGGATCAG 1800
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | || || ||||| || || ||| | ||||| |||||| | | || |||||
Sbjct 1801 CAAAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACGCTTGCGGACTACAAT 1860
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || |||||||| ||| | || | ||| | || | ||||| ||
Sbjct 1861 ATACAGAAAGAATCAACCCTTCACCTCGTTCTTCGCCTTCGCGGTGG 1907
Score = 123 bits (136), Expect = 2e-23
Identities = 172/238 (72%), Gaps = 6/238 (3%)
Strand=Plus/Plus
Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270
||||| ||||||| || || ||||| || | ||||| || || |||| ||||| ||||
Sbjct 989 TTGTATAGATGCAGATATTCGTTAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGG 1048
Query 22271 AAACCACCGATAC---CGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTC 22327
| | |||| || || | ||| || | || |||| | || ||||||||||| || |
Sbjct 1049 AGAGTTCCGACACGATCGAGAACGTTA--AGACCAAAA-TCCAGGACAAGGAGGGAATCC 1105
Query 22328 CACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCT 22387
|||| || || || | || ||||| ||||| |||||| | ||||| ||| ||| |||
Sbjct 1106 CACCGGACCAGCAGAGGCTGATATTCGCCGGGAAACAGCTTGAGGACGGCCGAACCCTCT 1165
Query 22388 CCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|||| |||||||| || || || || ||| |||| | ||| | || | || |||||
Sbjct 1166 CCGACTACAACATCCAGAAGGAGTCTACCCTACACCTCGTTCTTCGTCTTCGGGGAGG 1223
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
||||| || ||||||||||| || ||||| || || || | || || |||||||| ||
Sbjct 1309 AAAATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAGAGGCTGATCTTTGCCGGGAAG 1368
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | ||||| ||||||| || ||||||||||||| || || ||||||||
Sbjct 1369 CAACTTGAGGACGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAATCCAC 1421
>seq14985
Length=335608
Score = 102 bits (112), Expect = 7e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 22308 TCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTT 22367
||| ||||||||||| |||||||| ||||||||||| | || |||||||| || |||||
Sbjct 170260 TCAGGACAAGGAGGGCATTCCACCTGATCAACAACGATTGATTTTTGCCGGGAAGCAGTT 170201
Query 22368 AGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427
|| ||| || ||| | | |||||||||||||| || || || ||| | ||| | ||
Sbjct 170200 GGAAGATGGTCGGACCTTAGCGGATTACAACATTCAGAAGGAGTCAACCCTCCATCTGGT 170141
Query 22428 TTTG 22431
||||
Sbjct 170140 TTTG 170137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419355074557630
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