Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq38797 131 1e-25 seq41242 129 5e-25 seq40947 125 6e-24 seq14985 102 7e-17 >seq38797 Length=1288649 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || || || || ||| | ||||| || ||| |||| || || ||||| | Sbjct 628530 TACAGATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAGGTGGAGA 628589 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | ||||| | ||| | | || || || || ||||||||||| || || || | Sbjct 628590 GTTCGGATACTATTGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAG 628649 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||| ||| | || || ||||||||||||||| | || ||| ||||||| | | |||| Sbjct 628650 ATCAGCAAAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTTGCTGATT 628709 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||| || || || |||||| | ||| ||||| | || || | ||||| Sbjct 628710 ACAACATCCAGAAGGAGTCCACCCTTCATCTAGTTCTCCGTCTGAGGGGAGG 628761 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || ||||| |||| || || ||||| | | | Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| || || ||||||||||| |||||||| || || Sbjct 629507 GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 629566 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| |||||| | ||||| |||||| | | || || ||| Sbjct 629567 CAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAAC 629626 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| ||||| Sbjct 629627 ATTCAGAAAGAGTCCAC 629643 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || ||| ||||||| || || |||| | || || || | | | Sbjct 628990 GATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACCATCACCTTAGAGGTTGAGAGCTC 629049 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| | | || || || || ||||||||||| || || || || || Sbjct 629050 TGACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 629109 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || |||||||||||||| ||| | |||||| ||||||| | | || ||||| Sbjct 629110 ACAGAGGCTGATATTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAA 629169 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||| || || || | || ||||| | || || | ||||| Sbjct 629170 CATTCAAAAGGAGTCTACTCTTCACTTAGTCCTCCGTCTGAGGGGAGG 629217 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || ||| | || || || ||| |||| || || || || | | | Sbjct 628762 GATGCAGATCTTCGTAAAGACTCTCACTGGCAAGACGATCACCCTAGAGGTTGAGAGCTC 628821 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| | | || || || || ||||| |||||||| || || || || Sbjct 628822 TGACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAAGAGGGTATCCCCCCGGACCA 628881 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | || ||| ||||||| | | |||||||| Sbjct 628882 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 628941 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || |||||| | ||| | ||| | || || | ||||| Sbjct 628942 CATCCAGAAGGAGTCCACCCTCCATCTGGTTCTCCGTCTGAGGGGAGG 628989 >seq41242 Length=195047 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || ||||| |||| ||||| ||||| | | | Sbjct 171387 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAGAGCTCT 171328 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || ||||| || ||||||||||| || || ||||| || Sbjct 171327 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 171268 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | |||||||||||||| ||| | ||||| ||| ||| | | || |||||| Sbjct 171267 CAAAGGTTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTGGCAGACTACAAC 171208 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| ||||| ||| | || |||| Sbjct 171207 ATTCAAAAGGAATCGACCCTTCACCTAGT 171179 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| ||||| | ||||| || || |||| ||||||||||| | | Sbjct 172301 AGATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTTGAAGTGGAGAGCT 172242 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | || || | ||| || || || || |||||||| || || || |||| Sbjct 172241 CCGACACCATCGATAATGTGAAAGCTAAGATCCAGGATAAGGAGGGCATCCCCCCGGATC 172182 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || ||||| || || ||||| ||||| ||||||| | |||| |||| Sbjct 172181 AGCAGAGGCTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCCGCACCCTTGCCGACTACA 172122 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || || ||||| ||| Sbjct 172121 ACATCCAGAAGGAATCTACC 172102 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| ||||| ||||| | | | Sbjct 171616 GATGCAGATATTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTC 171557 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| || | || || || || ||||||||||| || || || || || Sbjct 171556 GGACACCATCGACAATGTAAAGGCTAAGATACAGGACAAGGAGGGCATCCCCCCGGACCA 171497 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| ||||| ||| | |||||| ||||||| | | || || || Sbjct 171496 GCAAAGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCTGACTATAA 171437 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||||||||| ||||||||| | ||| Sbjct 171436 CATTCAAAAGGAATCCACCCTCCAT 171412 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || |||||||| || | ||||| || || |||| ||||| || || | | Sbjct 147124 GATGCAGATCTTTGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGAGTTC 147065 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || | | || ||||| || || |||||||| ||||| || || || Sbjct 147064 CGACACGATTGATAACGTGAAGGCTAAAATACAGGATAAGGAGGGCATTCCCCCAGACCA 147005 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | |||||| ||||||| || | || ||||| Sbjct 147004 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCGGACTACAA 146945 Query 22398 CATTCAAAAAGAATCCACC 22416 |||||| ||||| || ||| Sbjct 146944 CATTCAGAAAGAGTCAACC 146926 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || |||||||| || | ||||| || || |||| ||||| || || | | Sbjct 152288 GATGCAGATCTTTGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGAGTTC 152229 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || | | || ||||| || || |||||||| ||||| || || || Sbjct 152228 CGACACGATTGATAACGTGAAGGCTAAAATACAGGATAAGGAGGGCATTCCCCCAGACCA 152169 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | |||||| ||||||| || | || ||||| Sbjct 152168 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCGGACTACAA 152109 Query 22398 CATTCAAAAAGAATCCACC 22416 |||||| ||||| || ||| Sbjct 152108 CATTCAGAAAGAGTCAACC 152090 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || |||| | ||||| || | | | Sbjct 171159 ATGCAAATATTTGTGAAGACGCTTACTGGAAAGACCATCACCTTAGAAGTAGAGAGCTCG 171100 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || || ||||||||||| || || || ||||| Sbjct 171099 GACACCATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATCCCGCCAGATCAG 171040 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || |||||| | |||||| |||||| | | |||||||| Sbjct 171039 CAGAGGCTAATCTTCGCTGGAAAACAGCTTGAGGATGGTCGCACCCTTGCAGATTACAAT 170980 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||||||||| | ||| Sbjct 170979 ATTCAGAAGGAATCCACCCTCCAT 170956 >seq40947 Length=4604 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| ||| | || ||||||||| |||| || || ||||| | | | Sbjct 1681 ATGCAGATTTTTGTTAAGACTCTTACTGGTAAAACGATCACCCTGGACGTGGAGAGCTCG 1740 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || |||||||| |||||||| ||||| || ||||| Sbjct 1741 GATACAATTGAGAATGTGAAGTCGAAGATTCAAGATAAGGAGGGGATTCCGCCGGATCAG 1800 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || ||| | ||||| |||||| | | || ||||| Sbjct 1801 CAAAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACGCTTGCGGACTACAAT 1860 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| ||| | || | ||| | || | ||||| || Sbjct 1861 ATACAGAAAGAATCAACCCTTCACCTCGTTCTTCGCCTTCGCGGTGG 1907 Score = 123 bits (136), Expect = 2e-23 Identities = 172/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||||| ||||||| || || ||||| || | ||||| || || |||| ||||| |||| Sbjct 989 TTGTATAGATGCAGATATTCGTTAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGG 1048 Query 22271 AAACCACCGATAC---CGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTC 22327 | | |||| || || | ||| || | || |||| | || ||||||||||| || | Sbjct 1049 AGAGTTCCGACACGATCGAGAACGTTA--AGACCAAAA-TCCAGGACAAGGAGGGAATCC 1105 Query 22328 CACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCT 22387 |||| || || || | || ||||| ||||| |||||| | ||||| ||| ||| ||| Sbjct 1106 CACCGGACCAGCAGAGGCTGATATTCGCCGGGAAACAGCTTGAGGACGGCCGAACCCTCT 1165 Query 22388 CCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| |||||||| || || || || ||| |||| | ||| | || | || ||||| Sbjct 1166 CCGACTACAACATCCAGAAGGAGTCTACCCTACACCTCGTTCTTCGTCTTCGGGGAGG 1223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || ||||||||||| || ||||| || || || | || || |||||||| || Sbjct 1309 AAAATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAGAGGCTGATCTTTGCCGGGAAG 1368 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | ||||| ||||||| || ||||||||||||| || || |||||||| Sbjct 1369 CAACTTGAGGACGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAATCCAC 1421 >seq14985 Length=335608 Score = 102 bits (112), Expect = 7e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 22308 TCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTT 22367 ||| ||||||||||| |||||||| ||||||||||| | || |||||||| || ||||| Sbjct 170260 TCAGGACAAGGAGGGCATTCCACCTGATCAACAACGATTGATTTTTGCCGGGAAGCAGTT 170201 Query 22368 AGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||| || ||| | | |||||||||||||| || || || ||| | ||| | || Sbjct 170200 GGAAGATGGTCGGACCTTAGCGGATTACAACATTCAGAAGGAGTCAACCCTCCATCTGGT 170141 Query 22428 TTTG 22431 |||| Sbjct 170140 TTTG 170137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419355074557630