Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq36378 93.3 9e-14 seq52231 87.8 4e-12 seq46808 87.8 4e-12 seq52036 86.0 1e-11 >seq36378 Length=917419 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 620124 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 620183 Query 142563 CCCCAC 142568 |||||| Sbjct 620184 CCCCAC 620189 >seq52231 Length=1377557 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 970365 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 970306 Query 142563 CCCCAC 142568 |||||| Sbjct 970305 CCCCAC 970300 >seq46808 Length=974088 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 477363 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 477422 Query 142563 CCCCAC 142568 |||||| Sbjct 477423 CCCCAC 477428 >seq52036 Length=5775 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 5534 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5475 Query 142564 CCCAC 142568 ||||| Sbjct 5474 CCCAC 5470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026876741970582