Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq25488 113 4e-20
seq41242 104 2e-17
seq38797 89.7 4e-13
seq40947 86.0 5e-12
>seq25488
Length=371609
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || || || || ||| || |||||| ||| || || || |||||
Sbjct 181529 GTCGACTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGCTTACCG 181470
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||| || || || |||||||||||||||||||| ||||| ||||| ||
Sbjct 181469 GCGAAGATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTA 181410
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||| |||| |||||| || |||| ||| | ||| || || || || |||
Sbjct 181409 ACGTTGTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTTAGGGTT 181350
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 181349 TTCACGAAGATCTGCAT 181333
>seq41242
Length=195047
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|||||||| |||||||| ||||| || | ||| || ||| ||||| ||||| |||
Sbjct 146699 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 146758
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || || ||||||||||| |||||||| |||||| ||
Sbjct 146759 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 146818
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| || |||| | || || |||| || | || || || || |||||
Sbjct 146819 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 146878
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||||||||||||
Sbjct 146879 TTCACAAAAATCTGCAT 146895
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|||||||| |||||||| ||||| || | ||| || ||| ||||| ||||| |||
Sbjct 151863 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 151922
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || || ||||||||||| |||||||| |||||| ||
Sbjct 151923 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 151982
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| || |||| | || || |||| || | || || || || |||||
Sbjct 151983 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 152042
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||||||||||||
Sbjct 152043 TTCACAAAAATCTGCAT 152059
>seq38797
Length=1288649
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
||||| || | ||||| || |||||||||||||| || || || || ||| |||
Sbjct 629199 ACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 629140
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
|| || || || || | || || | |||||||||||| || || || || |||||
Sbjct 629139 AGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTGG 629080
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
||||| || | | |||| |||||| | | || || || | ||| | || |||
Sbjct 629079 ATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAAGGTGATGGTCTTG 629020
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||| ||||| || || || ||||||||
Sbjct 629019 CCGGTTAGAGTCTTCACGAAGATCTGCAT 628991
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| | ||| | || || || || || ||||||||||| | || || ||||||
Sbjct 628972 AACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTC 628913
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
||| || || || || |||| || | ||| |||||||| || || || ||||||||
Sbjct 628912 AAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATACCCTCTTTGTCCTG 628853
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
||||| || | | |||| |||||| | | || || || | ||| | ||| ||
Sbjct 628852 GATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATCGTCTT 628793
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| || ||||| ||||| || ||||||||
Sbjct 628792 GCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763
>seq40947
Length=4604
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| |||||||| || || ||||| || | || || || ||||| || ||||||
Sbjct 1877 GTTGATTCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCGTCCTCAAGCTGCTTACCA 1818
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | || || ||||| ||||| || || || || |||||| ||
Sbjct 1817 GCAAAGATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTATCTTGAATCTTCGACTTC 1758
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| || || | | || ||||||| ||| | |||||| || || |||||
Sbjct 1757 ACATTCTCAATTGTATCCGAGCTCTCCACGTCCAGGGTGATCGTTTTACCAGTAAGAGTC 1698
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||||||||||||
Sbjct 1697 TTAACAAAAATCTGCAT 1681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419761113474024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |