Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq25488 113 4e-20 seq41242 104 2e-17 seq38797 89.7 4e-13 seq40947 86.0 5e-12 >seq25488 Length=371609 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || || || ||| || |||||| ||| || || || ||||| Sbjct 181529 GTCGACTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGCTTACCG 181470 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || || || |||||||||||||||||||| ||||| ||||| || Sbjct 181469 GCGAAGATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTA 181410 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| |||| |||||| || |||| ||| | ||| || || || || ||| Sbjct 181409 ACGTTGTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTTAGGGTT 181350 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 181349 TTCACGAAGATCTGCAT 181333 >seq41242 Length=195047 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| |||||||| ||||| || | ||| || ||| ||||| ||||| ||| Sbjct 146699 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 146758 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || ||||||||||| |||||||| |||||| || Sbjct 146759 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 146818 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || |||| | || || |||| || | || || || || ||||| Sbjct 146819 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 146878 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 146879 TTCACAAAAATCTGCAT 146895 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| |||||||| ||||| || | ||| || ||| ||||| ||||| ||| Sbjct 151863 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 151922 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || ||||||||||| |||||||| |||||| || Sbjct 151923 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 151982 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || |||| | || || |||| || | || || || || ||||| Sbjct 151983 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 152042 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 152043 TTCACAAAAATCTGCAT 152059 >seq38797 Length=1288649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | ||||| || |||||||||||||| || || || || ||| ||| Sbjct 629199 ACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 629140 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || || | || || | |||||||||||| || || || || ||||| Sbjct 629139 AGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTGG 629080 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | |||| |||||| | | || || || | ||| | || ||| Sbjct 629079 ATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAAGGTGATGGTCTTG 629020 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| || || || |||||||| Sbjct 629019 CCGGTTAGAGTCTTCACGAAGATCTGCAT 628991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || || || || ||||||||||| | || || |||||| Sbjct 628972 AACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTC 628913 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || || || |||| || | ||| |||||||| || || || |||||||| Sbjct 628912 AAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATACCCTCTTTGTCCTG 628853 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | |||| |||||| | | || || || | ||| | ||| || Sbjct 628852 GATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATCGTCTT 628793 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || ||||| ||||| || |||||||| Sbjct 628792 GCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763 >seq40947 Length=4604 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || || ||||| || | || || || ||||| || |||||| Sbjct 1877 GTTGATTCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCGTCCTCAAGCTGCTTACCA 1818 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | || || ||||| ||||| || || || || |||||| || Sbjct 1817 GCAAAGATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTATCTTGAATCTTCGACTTC 1758 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | || ||||||| ||| | |||||| || || ||||| Sbjct 1757 ACATTCTCAATTGTATCCGAGCTCTCCACGTCCAGGGTGATCGTTTTACCAGTAAGAGTC 1698 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 1697 TTAACAAAAATCTGCAT 1681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419761113474024