Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25504 196 9e-45 seq55201 125 1e-23 >seq25504 Length=639989 Score = 196 bits (216), Expect = 9e-45 Identities = 411/609 (67%), Gaps = 8/609 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| || || ||||| || || ||| |||||||| ||| | | |||||| Sbjct 367818 CTCGCCTTCTTTGCTGCATCTGATGGAATCGTCCTCGAGAACCTTGCCGGCCGCTTCATG 367759 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||| ||| | ||||| ||| |||||| || || ||||| ||||| || ||| Sbjct 367758 AGGGAGGTACAGCTCCCGGAGGCTCGCGCCTTCTATGGATTTCAGATTGCCATCGAAAAC 367699 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | || ||| | || |||||| ||| || ||| Sbjct 367698 ATCCACTCCGAGATGTACAGCCTTCTTCTCGAAACATACATCAAAGATTCCTGTGAGAAA 367639 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||| | ||||| ||||| | |||||| || ||||| | ||||| Sbjct 367638 TCCCATCTCTTCCATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAGGCTCAGTGGGCC 367579 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 || |||||||| || | || || | ||| | | | || ||| | | Sbjct 367578 CTACGTTGGATCGACGCCTCCAATTCA---TTTGCAGAGCGCATCCTTGCGTTTGCTTGC 367522 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || ||||| ||||||||||| || |||| ||||||||||||||||| ||| | | Sbjct 367521 GTTGAGGGAATCTTCTTCTCCGGTAGCTTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGG 367462 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 |||||||| ||||||||||| ||||| ||||| | |||||||| ||||| | Sbjct 367461 CTAATGCCCGGTCTCACCTTCTCCAACGAGCTCATATCTCGTGACGAGGGTCTGCACTGT 367402 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 |||||||| ||||| | ||| |||| ||||| | |||| ||| |||| |||| Sbjct 367401 GACTTTGCTTGCCTTC---TCTACAGCCTCCTCAACAATAAGCTCTCTGAGGATAGGGTT 367345 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 || | || || | || || || || || |||| ||||||| || | | || ||| Sbjct 367344 CGAGAGATTATTTCCGATGCTGTCGATATAGAGAGGGAGTTCGTCTGCGATGCTCTCCCC 367285 Query 42963 -GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 ||| | || || || ||||| || |||||| || ||||||| ||| || ||||| Sbjct 367284 TGTG-CTCTTGTGGGGATGAATGCTGATCTCATGAGCCAGTACATAGAGTTTGTTGCCGA 367226 Query 43022 CCATCTCCT 43030 | ||| || Sbjct 367225 TCGTCTTCT 367217 >seq55201 Length=1221137 Score = 125 bits (138), Expect = 1e-23 Identities = 344/525 (66%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| ||||| || || || || ||| ||||||||| ||| | | |||||| Sbjct 301015 CTCGCCTTCTTTGCCGCTTCAGATGGTATCGTCCTTGAGAACCTAGCCGGCCGATTCATG 301074 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || | ||||| ||| ||||||||||| ||||| ||||| || ||| Sbjct 301075 CGCGAAGTTCAACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATTGAAAAC 301134 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| || |||| || ||| | || |||||| || || | | Sbjct 301135 ATTCACTCCGAAATGTATAGTCTTCTCCTCGAGACTTACATCAAAGAC----TCAAAGGA 301190 Query 42603 AA----CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 || | || || ||||| ||||| || |||||| || ||||| | || Sbjct 301191 AAAATCCCTCCTTTTTCGTGCCATCGAGACCATCCCCTGCGTCGCTCGCAAGGCTCAGTG 301250 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 |||||| |||||| || | || || || | ||| || | | || || | Sbjct 301251 GGCGCTGCGCTGGATTGACGCCTCTGATACA---TTTGCTGAGCGGATTCTCGCTTTCGC 301307 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 ||| || || || |||||||| ||| |||| | ||||||||||||||||| || Sbjct 301308 TTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCG 301367 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 | | ||||||||| ||||| ||||| ||||| || || | || ||||| || || Sbjct 301368 CGGTTTGATGCCCGGTCTCACATTCTCCAACGAGCTGATATCTCGTGATGAGGGTCTCCA 301427 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898 | | ||||||||||| ||| || | || | || | ||||| || ||||| | Sbjct 301428 TTGCGACTTTGCCTG---CCTTTTATATAGTCTTCTGATCAACAAGATTTCAGAGGAGAG 301484 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||| || | || | |||| || ||||| || |||| |||||| Sbjct 301485 GGTTCGAGAGATTGTTGCGGATGCTGTGGATATTGAGAGGGAGTT 301529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943478647295520