Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq25504 196 9e-45
seq55201 125 1e-23
>seq25504
Length=639989
Score = 196 bits (216), Expect = 9e-45
Identities = 411/609 (67%), Gaps = 8/609 (1%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| |||||||| || || ||||| || || ||| |||||||| ||| | | ||||||
Sbjct 367818 CTCGCCTTCTTTGCTGCATCTGATGGAATCGTCCTCGAGAACCTTGCCGGCCGCTTCATG 367759
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
| ||||| ||| | ||||| ||| |||||| || || ||||| ||||| || |||
Sbjct 367758 AGGGAGGTACAGCTCCCGGAGGCTCGCGCCTTCTATGGATTTCAGATTGCCATCGAAAAC 367699
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| ||| ||||| | || ||| | || |||||| ||| || |||
Sbjct 367698 ATCCACTCCGAGATGTACAGCCTTCTTCTCGAAACATACATCAAAGATTCCTGTGAGAAA 367639
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
| || ||| | ||||| ||||| | |||||| || ||||| | |||||
Sbjct 367638 TCCCATCTCTTCCATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAGGCTCAGTGGGCC 367579
Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
|| |||||||| || | || || | ||| | | | || ||| | |
Sbjct 367578 CTACGTTGGATCGACGCCTCCAATTCA---TTTGCAGAGCGCATCCTTGCGTTTGCTTGC 367522
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782
|| ||||| ||||||||||| || |||| ||||||||||||||||| ||| | |
Sbjct 367521 GTTGAGGGAATCTTCTTCTCCGGTAGCTTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGG 367462
Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842
|||||||| ||||||||||| ||||| ||||| | |||||||| ||||| |
Sbjct 367461 CTAATGCCCGGTCTCACCTTCTCCAACGAGCTCATATCTCGTGACGAGGGTCTGCACTGT 367402
Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902
|||||||| ||||| | ||| |||| ||||| | |||| ||| |||| ||||
Sbjct 367401 GACTTTGCTTGCCTTC---TCTACAGCCTCCTCAACAATAAGCTCTCTGAGGATAGGGTT 367345
Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962
|| | || || | || || || || || |||| ||||||| || | | || |||
Sbjct 367344 CGAGAGATTATTTCCGATGCTGTCGATATAGAGAGGGAGTTCGTCTGCGATGCTCTCCCC 367285
Query 42963 -GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021
||| | || || || ||||| || |||||| || ||||||| ||| || |||||
Sbjct 367284 TGTG-CTCTTGTGGGGATGAATGCTGATCTCATGAGCCAGTACATAGAGTTTGTTGCCGA 367226
Query 43022 CCATCTCCT 43030
| ||| ||
Sbjct 367225 TCGTCTTCT 367217
>seq55201
Length=1221137
Score = 125 bits (138), Expect = 1e-23
Identities = 344/525 (66%), Gaps = 14/525 (3%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| |||||||| ||||| || || || || ||| ||||||||| ||| | | ||||||
Sbjct 301015 CTCGCCTTCTTTGCCGCTTCAGATGGTATCGTCCTTGAGAACCTAGCCGGCCGATTCATG 301074
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| || || | ||||| ||| ||||||||||| ||||| ||||| || |||
Sbjct 301075 CGCGAAGTTCAACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATTGAAAAC 301134
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| || |||| || ||| | || |||||| || || | |
Sbjct 301135 ATTCACTCCGAAATGTATAGTCTTCTCCTCGAGACTTACATCAAAGAC----TCAAAGGA 301190
Query 42603 AA----CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658
|| | || || ||||| ||||| || |||||| || ||||| | ||
Sbjct 301191 AAAATCCCTCCTTTTTCGTGCCATCGAGACCATCCCCTGCGTCGCTCGCAAGGCTCAGTG 301250
Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718
|||||| |||||| || | || || || | ||| || | | || || |
Sbjct 301251 GGCGCTGCGCTGGATTGACGCCTCTGATACA---TTTGCTGAGCGGATTCTCGCTTTCGC 301307
Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778
||| || || || |||||||| ||| |||| | ||||||||||||||||| ||
Sbjct 301308 TTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCG 301367
Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838
| | ||||||||| ||||| ||||| ||||| || || | || ||||| || ||
Sbjct 301368 CGGTTTGATGCCCGGTCTCACATTCTCCAACGAGCTGATATCTCGTGATGAGGGTCTCCA 301427
Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898
| | ||||||||||| ||| || | || | || | ||||| || ||||| |
Sbjct 301428 TTGCGACTTTGCCTG---CCTTTTATATAGTCTTCTGATCAACAAGATTTCAGAGGAGAG 301484
Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943
||| || | || | |||| || ||||| || |||| ||||||
Sbjct 301485 GGTTCGAGAGATTGTTGCGGATGCTGTGGATATTGAGAGGGAGTT 301529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943478647295520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |