Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq38797 95.1 1e-14
seq14985 86.0 5e-12
>seq38797
Length=1288649
Score = 95.1 bits (104), Expect = 1e-14
Identities = 104/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| || || |||||||| || ||| ||||||||| ||||||||||| ||
Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGC- 628931
Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| || || | || || | |||||||||||||| ||||| | |||||| ||| ||
Sbjct 628930 AAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGG 628871
Query 34020 CACGCTCTCTTTGTCC 34035
| | ||||||||||
Sbjct 628870 GATACCCTCTTTGTCC 628855
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| || || || |||||||| ||| ||||||||| ||||||||||| ||
Sbjct 628761 CCTCCCCTCAGACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC- 628703
Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| || || | || || | || ||||||||||| ||||| | |||||||| ||
Sbjct 628702 AAGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGG 628643
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| || ||| |||||| || || ||| | | | | |||| | | ||
Sbjct 628642 GATGCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCAC 628583
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133
|||| || || || || ||||| || || ||||| ||||| ||||| | |||
Sbjct 628582 CTCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCATCTGTAA 628529
>seq14985
Length=335608
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| ||||| |||| || |||||||| || || ||||||||||||||||||||| ||
Sbjct 170123 CCGCCTCTAAGCCTCAAAACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCCGCT 170182
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || | || ||||| ||||| |||||||| |||| || || ||||| ||
Sbjct 170183 AAGGTCCGACCATCTTCCAACTGCTTCCCGGCAAAAATCAATCGTTGTTGATCAGGTGGA 170242
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 170243 ATGCCCTCCTTGTCC 170257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396709612787404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |