Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq25504 132 6e-26 seq58380 107 2e-18 seq55201 96.9 4e-15 seq40021 82.4 9e-11 >seq25504 Length=639989 Score = 132 bits (146), Expect = 6e-26 Identities = 193/272 (71%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| |||||||||||||| || ||||| || || |||||| || || Sbjct 367394 GCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCG 367453 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || | |||||| | |||||| || ||||| || ||| |||||||||||| Sbjct 367454 GGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATT 367513 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 ||||| || || || ||||||| || ||||| ||||| || || | ||| | | Sbjct 367514 CCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGA---GGCGTCGATC 367570 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 126286 || | |||||||| ||||| ||| || |||||||||| ||| || | ||| Sbjct 367571 CAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGGAAG 367630 Query 126287 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 || | || || | | |||||||||||| Sbjct 367631 AGATGGGATTTCTCACAGGAATCTTTGATGTA 367662 >seq58380 Length=580937 Score = 107 bits (118), Expect = 2e-18 Identities = 195/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| |||||||||||||| || || ||||| | |||||||| | |||||||||| | Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | ||| | | || ||| | || || || ||||||||||| | || || ||| Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028 Query 10994 CACGGTTGATTTTC-ACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || ||| |||||| | | ||| ||| | |||||| |||| |||||| || || Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAA-AGATCTCGAACTCGTGAGGCACCAACGCC 482969 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 11111 |||||||| |||||||| | | | | | |||| || ||||| ||| | ||||| Sbjct 482968 AACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCAC 482910 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | || || || ||| || || ||||| || || ||||| Sbjct 482909 CAGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 482870 >seq55201 Length=1221137 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||| ||||| || || || || || ||||| || || Sbjct 301440 GGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACC 301381 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| | ||| |||||||| | |||||| || || || || || |||||||| || Sbjct 301380 GGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAAT 301321 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA 126225 || || || || ||||| || | | ||||||||||| | || | ||||| Sbjct 301320 ACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGA---GGCGTCAAT 301264 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| || ||||||||| ||||| ||| || |||| ||||| ||| || Sbjct 301263 CCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGC 301210 >seq40021 Length=871558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 || ||||| |||| ||| || |||| || ||||| | ||| ||||||| || || Sbjct 119974 GCAATTGATGCCAAATTGCATACAGCAGTTTCATCGGGACTGGTGAACTCTATTATCTCA 119915 Query 114530 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 114589 ||||||||||||||| ||| ||||| || | ||| |||||||| ||| | || || Sbjct 119914 GTACACAAATTTGAAGACTTTATGGTTCCAAGGTTGTTTTGATTGCTTTTTCTATTGCAA 119855 Query 114590 GCATCCTT 114597 |||||||| Sbjct 119854 GCATCCTT 119847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596809246598160